Basic Information:

  VIRBase ID:  

VHID00170091

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          BECN1:  NM_003766     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	BECN1
miRBase Accession/Entrez ID	MIMAT0014352	8678
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATG6//beclin1//VPS30

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BECN1	chr17:40965497(-) A-I      intronic chr17:40965096(-) A-I      intronic chr17:40964950(-) A-I      intronic chr17:40964949(-) A-I      intronic chr17:40964938(-) A-I      intronic chr17:40964550(-) A-I      intronic chr17:40964488(-) A-I      intronic chr17:40964319(-) A-I      intronic chr17:40964302(-) A-I      intronic chr17:40964240(-) A-I      intronic chr17:40964237(-) A-I      intronic chr17:40964159(-) A-I      intronic chr17:40974109(-) A-I      intronic chr17:40975333(-) A-I      intronic chr17:40975325(-) A-I      intronic chr17:40975284(-) A-I      intronic chr17:40974836(-) A-I      intronic chr17:40974783(-) A-I      intronic chr17:40974097(-) A-I      intronic chr17:40973294(-) A-I      intronic chr17:40973180(-) A-I      intronic chr17:40973174(-) A-I      intronic chr17:40973163(-) A-I      intronic chr17:40969862(-) A-I      intronic chr17:40969848(-) A-I      intronic chr17:40969834(-) A-I      intronic chr17:40965129(-) A-I      intronic chr17:40964717(-) A-I      intronic chr17:40968905(-) A-I      intronic chr17:40965112(-) A-I      intronic chr17:40973328(-) A-I      intronic chr17:40968631(-) A-I      intronic chr17:40973980(-) A-I      intronic chr17:40964315(-) A-I      intronic chr17:40969639(-) A-I      intronic chr17:40975437(-) A-I      intronic chr17:40969291(-) A-I      intronic chr17:40968912(-) A-I      intronic chr17:40964198(-) A-I      intronic chr17:40973257(-) A-I      intronic chr17:40964290(-) A-I      intronic chr17:40969204(-) A-I      intronic chr17:40964358(-) A-I      intronic chr17:40964345(-) A-I      intronic chr17:40965510(-) A-I      intronic chr17:40969684(-) A-I      intronic chr17:40964254(-) A-I      intronic chr17:40975401(-) A-I      intronic chr17:40974206(-) A-I      intronic chr17:40968452(-) A-I      intronic chr17:40975421(-) A-I      intronic chr17:40965135(-) A-I      intronic chr17:40969800(-) A-I      intronic chr17:40973345(-) A-I      intronic chr17:40964158(-) A-I      intronic chr17:40973968(-) A-I      intronic chr17:40975544(-) A-I      intronic chr17:40973981(-) A-I      intronic chr17:40974139(-) A-I      intronic chr17:40964513(-) A-I      intronic chr17:40974876(-) A-I      intronic chr17:40964964(-) A-I      intronic chr17:40973261(-) A-I      intronic chr17:40964475(-) A-I      intronic chr17:40964677(-) A-I      intronic chr17:40964547(-) A-I      intronic chr17:40965302(-) A-I      intronic chr17:40969840(-) A-I      intronic chr17:40964191(-) A-I      intronic chr17:40965134(-) A-I      intronic chr17:40969664(-) A-I      intronic chr17:40964137(-) A-I      intronic chr17:40965548(-) A-I      intronic chr17:40973258(-) A-I      intronic chr17:40973990(-) A-I      intronic chr17:40964619(-) A-I      intronic chr17:40965442(-) A-I      intronic chr17:40974121(-) A-I      intronic chr17:40975452(-) A-I      intronic chr17:40974043(-) A-I      intronic chr17:40975051(-) A-I      intronic chr17:40968453(-) A-I      intronic chr17:40964487(-) A-I      intronic chr17:40974679(-) A-I      intronic chr17:40964682(-) A-I      intronic chr17:40964270(-) A-I      intronic chr17:40970662(-) A-I      NonSyn:Thr->Ala chr17:40965227(-) A-I      intronic chr17:40974878(-) A-I      intronic chr17:40964206(-) A-I      intronic chr17:40974058(-) A-I      intronic chr17:40973192(-) A-I      intronic chr17:40965371(-) A-I      intronic chr17:40964199(-) A-I      intronic chr17:40969810(-) A-I      intronic chr17:40965001(-) A-I      intronic chr17:40964663(-) A-I      intronic chr17:40975455(-) A-I      intronic chr17:40964220(-) A-I      intronic chr17:40974055(-) A-I      intronic chr17:40964961(-) A-I      intronic chr17:40969839(-) A-I      intronic chr17:40964278(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BECN1	chr17:40964146(-) A-I intron -    15342557 chr17:40964158(-) A-I intron -    15342557 chr17:40964191(-) A-I intron -    15342557 chr17:40964198(-) A-I intron -    15342557 chr17:40964199(-) A-I intron -    15342557 chr17:40964206(-) A-I intron -    15342557 chr17:40964220(-) A-I intron -    15342557 chr17:40964270(-) A-I intron -    15342557 chr17:40964278(-) A-I intron -    15342557 chr17:40964315(-) A-I intron -    15342557 chr17:40964345(-) A-I intron -    15342557 chr17:40964358(-) A-I intron -    15342557 chr17:40964363(-) A-I intron -    15342557 chr17:40964475(-) A-I intron -    15342557 chr17:40964487(-) A-I intron -    15342557 chr17:40964513(-) A-I intron -    15342557 chr17:40964547(-) A-I intron -    15342557 chr17:40964677(-) A-I intron -    15342557 chr17:40964717(-) A-I intron -    15342557 chr17:40970662(-) A-I exon CDS    15342557 chr17:40971402(-) A-I intron -    15342557 chr17:40964137(-) A-G intron -    22484847 chr17:40964220(-) A-G intron -    22484847 chr17:40964547(-) A-G intron -    22484847 chr17:40969684(-) A-G intron -    22484847 chr17:40969810(-) A-G intron -    22484847 chr17:40969839(-) A-G intron -    22484847 chr17:40973328(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BECN1	chr17:40962515-40962516(-) m6A 3'UTR//exon       24981863//26404942 chr17:40962543-40962544(-) m6A 3'UTR//exon       24981863//26404942 chr17:40962687-40962688(-) m6A 3'UTR//exon       27773535 chr17:40962719-40962720(-) m6A 3'UTR//exon       27773535 chr17:40962854-40962855(-) m6A 3'UTR//CDS//exon       26404942//27773535 chr17:40962881-40962882(-) m6A 3'UTR//CDS//exon       26404942//27773535 chr17:40962916-40962917(-) m6A 3'UTR//CDS//exon       27773535 chr17:40963694-40963695(-) m6A 3'UTR//CDS//exon//intron       27773535 chr17:40963735-40963736(-) m6A 3'UTR//CDS//exon//intron       27773535 chr17:40963771-40963772(-) m6A 3'UTR//CDS//exon//intron       27773535 chr17:40967692-40967693(-) m6A exon//intron       27773535 chr17:40968000-40968001(-) m6A CDS//exon//intron       - chr17:40970258-40970259(-) m6A CDS//exon       24981863//28052920//26404942//27371828 chr17:40970310-40970311(-) m6A CDS//exon       24981863//28052920//26404942//27371828 chr17:40970387-40970388(-) m6A CDS//exon       24981863//26404942//27371828 chr17:40970567-40970568(-) m6A CDS//exon//intron       24981863//26404942//27371828 chr17:40970603-40970604(-) m6A CDS//exon//intron       27371828 chr17:40970612-40970613(-) m6A CDS//exon//intron       27371828 chr17:40970661-40970662(-) m6A CDS//exon//intron       27371828 chr17:40970687-40970688(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536 chr17:40970810-40970811(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536 chr17:40970823-40970824(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536 chr17:40971611-40971612(-) m6A 3'UTR//CDS//exon       - chr17:40972390-40972391(-) m6A exon//intron       - chr17:40972805-40972806(-) m6A CDS//exon       27773535 chr17:40972820-40972821(-) m6A CDS//exon       27773535 chr17:40972830-40972831(-) m6A CDS//exon       27773535 chr17:40975755-40975756(-) m6A CDS//intron       27773535 chr17:40975772-40975773(-) m6A CDS//exon       27773535 chr17:40975791-40975792(-) m6A CDS//exon       27773535//27773536 chr17:40975812-40975813(-) m6A CDS//exon       27773535//27773536 chr17:40975817-40975818(-) m6A CDS//exon       27773535//27773536 chr17:40976200-40976201(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828//27773536 chr17:40976205-40976206(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828//27773536 chr17:40976273-40976274(-) m6A 5'UTR//exon//intron       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BECN1	Chromatin K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: BECN1

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg