Basic Information:

  VIRBase ID:  

VHID00168740

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          CLCNKA:  NM_004070     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	CLCNKA
miRBase Accession/Entrez ID	MIMAT0014352	1187
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ClC-K1//CLCK1//hClC-Ka

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLCNKA	chr1:16352294(+) A-I      intronic chr1:16352139(+) A-I      intronic chr1:16351909(+) A-I      intronic chr1:16352159(+) A-I      intronic chr1:16351962(+) A-I      intronic chr1:16352379(+) A-I      intronic chr1:16352058(+) A-I      intronic chr1:16351959(+) A-I      intronic chr1:16352075(+) A-I      intronic chr1:16352028(+) A-I      intronic chr1:16352036(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLCNKA	chr1:16351909(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLCNKA	chr1:16354317-16354318(+) m6A CDS//exon       - chr1:16360349-16360350(+) m6A 3'UTR//exon       25456834 chr1:16360394-16360395(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLCNKA	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: CLCNKA

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg