Detail Information

Basic Information:


  VIRBase ID:  

VHID00168332

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-5p:           ZNF546:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H7-5p ZNF546
miRBase
Accession/Entrez ID		 MIMAT0014351 339327
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - ZNF49

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF546
chr19:40510314(+) A-I      intronic
chr19:40510341(+) A-I      intronic
chr19:40510316(+) A-I      intronic
chr19:40522184(+) A-I      3'UTR
chr19:40530799(+) A-I      intronic
chr19:40522166(+) A-I      3'UTR
chr19:40522156(+) A-I      3'UTR
chr19:40510330(+) A-I      intronic
chr19:40506371(+) A-I      intronic
chr19:40506441(+) A-I      intronic
chr19:40506303(+) A-I      intronic
chr19:40509720(+) A-I      intronic
chr19:40509763(+) A-I      intronic
chr19:40509798(+) A-I      intronic
chr19:40505694(+) A-I      intronic
chr19:40509844(+) A-I      intronic
chr19:40511163(+) A-I      intronic
chr19:40510292(+) A-I      intronic
chr19:40511124(+) A-I      intronic
chr19:40505746(+) A-I      intronic
chr19:40509664(+) A-I      intronic
chr19:40506312(+) A-I      intronic
chr19:40506320(+) A-I      intronic
chr19:40506328(+) A-I      intronic
chr19:40506359(+) A-I      intronic
chr19:40506372(+) A-I      intronic
chr19:40506415(+) A-I      intronic
chr19:40505745(+) A-I      intronic
chr19:40507530(+) A-I      intronic
chr19:40507531(+) A-I      intronic
chr19:40509183(+) A-I      intronic
chr19:40522339(+) A-I      3'UTR
chr19:40522242(+) A-I      3'UTR
chr19:40522241(+) A-I      3'UTR
chr19:40522353(+) A-I      3'UTR
chr19:40522387(+) A-I      3'UTR
chr19:40528695(+) A-I      intronic
chr19:40509799(+) A-I      intronic
chr19:40509732(+) A-I      intronic
chr19:40524059(+) A-I      intronic
chr19:40509204(+) A-I      intronic
chr19:40506369(+) A-I      intronic
chr19:40509719(+) A-I      intronic
chr19:40509758(+) A-I      intronic
chr19:40524017(+) A-I      intronic
chr19:40510194(+) A-I      intronic
chr19:40509151(+) A-I      intronic
chr19:40506483(+) A-I      intronic
chr19:40516139(+) A-I      intronic
chr19:40509840(+) A-I      intronic
chr19:40506450(+) A-I      intronic
chr19:40516148(+) A-I      intronic
chr19:40510199(+) A-I      intronic
chr19:40505542(+) A-I      intronic
chr19:40522043(+) A-I      3'UTR
chr19:40508724(+) A-I      intronic
chr19:40509733(+) A-I      intronic
chr19:40506383(+) A-I      intronic
chr19:40522284(+) A-I      3'UTR
chr19:40505538(+) A-I      intronic
chr19:40510376(+) A-I      intronic
chr19:40516773(+) A-I      intronic
chr19:40506370(+) A-I      intronic
chr19:40528336(+) A-I      intronic
chr19:40516694(+) A-I      intronic
chr19:40509759(+) A-I      intronic
chr19:40509847(+) A-I      intronic
chr19:40516149(+) A-I      intronic
chr19:40508630(+) A-I      intronic
chr19:40509647(+) A-I      intronic
chr19:40505622(+) A-I      intronic
chr19:40510356(+) A-I      intronic
chr19:40522306(+) A-I      3'UTR
chr19:40506436(+) A-I      intronic
chr19:40522150(+) A-I      3'UTR
chr19:40506409(+) A-I      intronic
chr19:40509143(+) A-I      intronic
chr19:40509858(+) A-I      intronic
chr19:40516127(+) A-I      intronic
chr19:40505758(+) A-I      intronic
chr19:40506344(+) A-I      intronic
chr19:40505547(+) A-I      intronic
chr19:40510405(+) A-I      intronic
chr19:40510436(+) A-I      intronic
chr19:40510261(+) A-I      intronic
chr19:40524129(+) A-I      intronic
chr19:40524014(+) A-I      intronic
chr19:40510385(+) A-I      intronic
chr19:40509757(+) A-I      intronic
chr19:40506277(+) A-I      intronic
chr19:40509082(+) A-I      intronic
chr19:40509655(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF546
chr19:40509151(+) A-G intron -    22484847
chr19:40516650(+) T-C intron -    22484847
chr19:40517271(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF546
chr19:40519648-40519649(+) m6A CDS//intron       22608085
chr19:40519667-40519668(+) m6A CDS//intron       24981863//22608085
chr19:40519682-40519683(+) m6A CDS//intron       24981863//22608085
chr19:40519713-40519714(+) m6A CDS//intron       24981863//22608085
chr19:40519728-40519729(+) m6A CDS//intron       24981863//22608085
chr19:40519737-40519738(+) m6A CDS//intron       24981863//22608085
chr19:40519776-40519777(+) m6A CDS//intron       24981863//22608085
chr19:40519857-40519858(+) m6A CDS//intron       24981863//22608085
chr19:40519905-40519906(+) m6A CDS//intron       24981863//22608085
chr19:40519952-40519953(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40519989-40519990(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520025-40520026(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520046-40520047(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520073-40520074(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520120-40520121(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520137-40520138(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520157-40520158(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520193-40520194(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520214-40520215(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520269-40520270(+) m6A CDS//intron       22608085
chr19:40520325-40520326(+) m6A CDS//intron       22608085
chr19:40520409-40520410(+) m6A CDS//intron       22608085
chr19:40520457-40520458(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520493-40520494(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520541-40520542(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520560-40520561(+) m6A CDS//intron       24284625//24981863//22608085
chr19:40520577-40520578(+) m6A CDS//intron       24981863//22608085
chr19:40520644-40520645(+) m6A CDS//intron       24981863//22608085
chr19:40520689-40520690(+) m6A CDS//intron       24981863//22608085
chr19:40520745-40520746(+) m6A CDS//intron       22608085
chr19:40520793-40520794(+) m6A CDS//intron       24981863//22608085
chr19:40520829-40520830(+) m6A CDS//intron       24981863//22608085
chr19:40520997-40520998(+) m6A CDS//intron       24981863//22608085
chr19:40521040-40521041(+) m6A CDS//intron       24981863//22608085
chr19:40521045-40521046(+) m6A CDS//intron       24981863//22608085
chr19:40521081-40521082(+) m6A CDS//intron       24981863//22608085
chr19:40521165-40521166(+) m6A CDS//intron       24981863//22608085
chr19:40521361-40521362(+) m6A CDS//intron       24981863//22608085
chr19:40521399-40521400(+) m6A CDS//intron       24981863//22608085
chr19:40521417-40521418(+) m6A CDS//intron       24981863//22608085
chr19:40521465-40521466(+) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40521501-40521502(+) m6A CDS//intron       24981863//27773535//22608085
chr19:40521549-40521550(+) m6A CDS//intron       24981863//22608085
chr19:40521585-40521586(+) m6A CDS//intron       24981863//22608085
chr19:40521764-40521765(+) m6A 3'UTR//intron       22608085
chr19:40521836-40521837(+) m6A 3'UTR//intron       22608085
chr19:40521863-40521864(+) m6A 3'UTR//intron       22608085
chr19:40521899-40521900(+) m6A 3'UTR//intron       22608085
chr19:40521925-40521926(+) m6A 3'UTR//intron       22608085
chr19:40521936-40521937(+) m6A 3'UTR//intron       22608085
chr19:40522012-40522013(+) m6A 3'UTR//intron       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H7-5p
Exosome K562 cells     24460325
ZNF546
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H7-5p
Interactor2: ZNF546

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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