Basic Information:

  VIRBase ID:  

VHID00168309

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-5p:  MIMAT0014351          RABL3:  NM_173825     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H7-5p	RABL3
miRBase Accession/Entrez ID	MIMAT0014351	285282
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PNCA5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RABL3	chr3:120441006(-) A-I      intronic chr3:120440978(-) A-I      intronic chr3:120440979(-) A-I      intronic chr3:120440937(-) A-I      intronic chr3:120440942(-) A-I      intronic chr3:120440975(-) A-I      intronic chr3:120458061(-) A-I      intronic chr3:120417005(-) A-I      intronic chr3:120416978(-) A-I      intronic chr3:120436453(-) A-I      intronic chr3:120458044(-) A-I      intronic chr3:120450870(-) A-I      intronic chr3:120450865(-) A-I      intronic chr3:120445261(-) A-I      intronic chr3:120445207(-) A-I      intronic chr3:120436489(-) A-I      intronic chr3:120436454(-) A-I      intronic chr3:120434263(-) A-I      intronic chr3:120436423(-) A-I      intronic chr3:120416883(-) A-I      intronic chr3:120416842(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RABL3	chr3:120458131(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RABL3	chr3:120405874-120405875(-) m6A 3'UTR       27773535 chr3:120405914-120405915(-) m6A 3'UTR       27773535 chr3:120405979-120405980(-) m6A 3'UTR       27773535 chr3:120406739-120406740(-) m6A 3'UTR       24981863 chr3:120428696-120428697(-) Y CDS//exon//intron       26075521 chr3:120428719-120428720(-) m6A CDS//exon//intron       24981863 chr3:120428734-120428735(-) m6A CDS//exon//intron       24981863 chr3:120429362-120429363(-) m6A exon//intron       27773535 chr3:120449568-120449569(-) m6A CDS//exon       24981863//27371828 chr3:120457399-120457400(-) m6A exon//intron       24981863//27371828 chr3:120457440-120457441(-) m6A exon//intron       24981863 chr3:120457481-120457482(-) m6A exon//intron       24981863 chr3:120457492-120457493(-) m6A exon//intron       24981863 chr3:120461313-120461314(-) m6A CDS//exon       24981863 chr3:120461385-120461386(-) m6A 5'UTR       24981863 chr3:120461575-120461576(-) m6A 5'UTR       24981863//22608085 chr3:120461624-120461625(-) m6A 5'UTR       24981863//22608085 chr3:120461651-120461652(-) m6A 5'UTR       24981863//22608085 chr3:120461658-120461659(-) m6A 5'UTR       24981863//22608085 chr3:120461665-120461666(-) m6A 5'UTR       24981863//22608085 chr3:120461672-120461673(-) m6A 5'UTR       24981863//22608085 chr3:120461705-120461706(-) m1A 5'UTR       26863196//26863410

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H7-5p	Exosome K562 cells     24460325
	RABL3	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H7-5p
Interactor2: RABL3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg