Detail Information

Basic Information:


  VIRBase ID:  

VHID00168264

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-5p:           LCLAT1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H7-5p LCLAT1
miRBase
Accession/Entrez ID		 MIMAT0014351 253558
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - 1AGPAT8//AGPAT8//ALCAT1//HSRG1849//LYCAT//UNQ1849

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LCLAT1
chr2:30767521(+) A-I      intronic
chr2:30761244(+) A-I      intronic
chr2:30761238(+) A-I      intronic
chr2:30702195(+) A-I      intronic
chr2:30678655(+) A-I      intronic
chr2:30677458(+) A-I      intronic
chr2:30677360(+) A-I      intronic
chr2:30811612(+) A-I      intronic
chr2:30811584(+) A-I      intronic
chr2:30811568(+) A-I      intronic
chr2:30811528(+) A-I      intronic
chr2:30811506(+) A-I      intronic
chr2:30811483(+) A-I      intronic
chr2:30811546(+) A-I      intronic
chr2:30852273(+) A-I      intronic
chr2:30852230(+) A-I      intronic
chr2:30852206(+) A-I      intronic
chr2:30852315(+) A-I      intronic
chr2:30852279(+) A-I      intronic
chr2:30830985(+) A-I      intronic
chr2:30852306(+) A-I      intronic
chr2:30852328(+) A-I      intronic
chr2:30852305(+) A-I      intronic
chr2:30852197(+) A-I      intronic
chr2:30852332(+) A-I      intronic
chr2:30852274(+) A-I      intronic
chr2:30852270(+) A-I      intronic
chr2:30852299(+) A-I      intronic
chr2:30852347(+) A-I      intronic
chr2:30852170(+) A-I      intronic
chr2:30852179(+) A-I      intronic
chr2:30702165(+) A-I      intronic
chr2:30678614(+) A-I      intronic
chr2:30703299(+) A-I      intronic
chr2:30808989(+) A-I      intronic
chr2:30852275(+) A-I      intronic
chr2:30677544(+) A-I      intronic
chr2:30703266(+) A-I      intronic
chr2:30746614(+) A-I      intronic
chr2:30808963(+) A-I      intronic
chr2:30852171(+) A-I      intronic
chr2:30852240(+) A-I      intronic
chr2:30809058(+) A-I      intronic
chr2:30831025(+) A-I      intronic
chr2:30677375(+) A-I      intronic
chr2:30753444(+) A-I      intronic
chr2:30811475(+) A-I      intronic
chr2:30762169(+) A-I      intronic
chr2:30830986(+) A-I      intronic
chr2:30701479(+) A-I      intronic
chr2:30684362(+) A-I      intronic
chr2:30678696(+) A-I      intronic
chr2:30753515(+) A-I      intronic
chr2:30753876(+) A-I      intronic
chr2:30831011(+) A-I      intronic
chr2:30761380(+) A-I      intronic
chr2:30811606(+) A-I      intronic
chr2:30856387(+) A-I      intronic
chr2:30706164(+) A-I      intronic
chr2:30761332(+) A-I      intronic
chr2:30779838(+) A-I      intronic
chr2:30796971(+) A-I      intronic
chr2:30701424(+) A-I      intronic
chr2:30762172(+) A-I      intronic
chr2:30763579(+) A-I      intronic
chr2:30702149(+) A-I      intronic
chr2:30761892(+) A-I      intronic
chr2:30678736(+) A-I      intronic
chr2:30761965(+) A-I      intronic
chr2:30678624(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LCLAT1
chr2:30829248(+) A-I intron -    15342557   //15258596
chr2:30829686(+) A-I intron -    15342557   //15258596
chr2:30830087(+) A-I intron -    15342557   //15258596
chr2:30830109(+) A-I intron -    15342557   //15258596
chr2:30830113(+) A-I intron -    15342557   //15258596
chr2:30830154(+) A-I intron -    15342557   //15258596
chr2:30830985(+) A-I intron -    15342557
chr2:30830986(+) A-I intron -    15342557
chr2:30831000(+) A-I intron -    15342557
chr2:30831004(+) A-I intron -    15342557
chr2:30831011(+) A-I intron -    15342557
chr2:30831025(+) A-I intron -    15342557
chr2:30852170(+) A-I intron -    22028664
chr2:30852171(+) A-I intron -    22028664
chr2:30852179(+) A-I intron -    22028664
chr2:30852197(+) A-I intron -    22028664
chr2:30852206(+) A-I intron -    22028664
chr2:30852230(+) A-I intron -    22028664
chr2:30852240(+) A-I intron -    22028664
chr2:30852264(+) A-I intron -    22028664
chr2:30852270(+) A-I intron -    22028664
chr2:30852273(+) A-I intron -    22028664
chr2:30852274(+) A-I intron -    22028664
chr2:30852275(+) A-I intron -    22028664
chr2:30852279(+) A-I intron -    22028664
chr2:30852299(+) A-I intron -    22028664
chr2:30852305(+) A-I intron -    22028664
chr2:30852306(+) A-I intron -    22028664
chr2:30852315(+) A-I intron -    22028664
chr2:30852328(+) A-I intron -    22028664
chr2:30852332(+) A-I intron -    22028664
chr2:30852347(+) A-I intron -    22028664
chr2:30677375(+) A-G intron -    22484847
chr2:30677584(+) T-G intron -    22484847
chr2:30678629(+) A-G intron -    22484847
chr2:30701422(+) A-G intron -    22484847
chr2:30701424(+) A-G intron -    22484847
chr2:30701433(+) A-G intron -    22484847
chr2:30701437(+) A-G intron -    22484847
chr2:30703266(+) A-G intron -    22484847
chr2:30808921(+) A-G intron -    22484847
chr2:30811475(+) A-G intron -    22484847
chr2:30811536(+) A-G intron -    22484847
chr2:30811606(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LCLAT1
chr2:30670262-30670263(+) m6A 5'UTR//exon//intron       24981863
chr2:30829497-30829498(+) m6A 3'UTR//intron       22608085
chr2:30829531-30829532(+) m6A 3'UTR//intron       22608085
chr2:30829616-30829617(+) m6A 3'UTR//intron       22608085
chr2:30829644-30829645(+) m6A 3'UTR//intron       22608085
chr2:30829660-30829661(+) m6A 3'UTR//intron       22608085
chr2:30829739-30829740(+) m6A 3'UTR//intron       22608085
chr2:30829745-30829746(+) m6A 3'UTR//intron       22608085
chr2:30829763-30829764(+) m6A 3'UTR//intron       22608085
chr2:30829791-30829792(+) m6A 3'UTR//intron       22608085
chr2:30829797-30829798(+) m6A 3'UTR//intron       22608085
chr2:30829818-30829819(+) m6A 3'UTR//intron       22608085
chr2:30829837-30829838(+) m6A 3'UTR//intron       22608085
chr2:30863066-30863067(+) m6A 3'UTR//CDS//exon       24981863
chr2:30863111-30863112(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr2:30863135-30863136(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr2:30863226-30863227(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr2:30863256-30863257(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr2:30863299-30863300(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr2:30863409-30863410(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr2:30863424-30863425(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr2:30863451-30863452(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr2:30863509-30863510(+) m6A 3'UTR//exon       24981863//22608085
chr2:30863739-30863740(+) m6A 3'UTR//exon       24981863
chr2:30863767-30863768(+) m6A 3'UTR//exon       24981863
chr2:30863803-30863804(+) m6A 3'UTR//exon       24981863
chr2:30864085-30864086(+) m6A 3'UTR       24981863
chr2:30864119-30864120(+) m6A 3'UTR       24981863
chr2:30864125-30864126(+) m6A 3'UTR       24981863
chr2:30864159-30864160(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H7-5p
Exosome K562 cells     24460325
LCLAT1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H7-5p
Interactor2: LCLAT1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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