Basic Information:

  VIRBase ID:  

VHID00167929

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-5p:  MIMAT0014351          SNX21:  NM_033421     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H7-5p	SNX21
miRBase Accession/Entrez ID	MIMAT0014351	90203
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf161//dJ337O18.4//PP3993//SNX-L//SNXL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNX21	chr20:44467235(+) A-I      intronic chr20:44467233(+) A-I      intronic chr20:44467242(+) A-I      intronic chr20:44467232(+) A-I      intronic chr20:44468513(+) A-I      intronic chr20:44467289(+) A-I      intronic chr20:44466796(+) A-I      intronic chr20:44465198(+) A-I      intronic chr20:44467334(+) A-I      intronic chr20:44465223(+) A-I      intronic chr20:44468450(+) A-I      intronic chr20:44468461(+) A-I      intronic chr20:44468437(+) A-I      intronic chr20:44468508(+) A-I      intronic chr20:44467234(+) A-I      intronic chr20:44467191(+) A-I      intronic chr20:44466838(+) A-I      intronic chr20:44465213(+) A-I      intronic chr20:44465206(+) A-I      intronic chr20:44465186(+) A-I      intronic chr20:44465112(+) A-I      intronic chr20:44467760(+) A-I      intronic chr20:44467754(+) A-I      intronic chr20:44465036(+) A-I      intronic chr20:44464882(+) A-I      intronic chr20:44467178(+) A-I      intronic chr20:44467137(+) A-I      intronic chr20:44467998(+) A-I      intronic chr20:44467131(+) A-I      intronic chr20:44466863(+) A-I      intronic chr20:44467706(+) A-I      intronic chr20:44467721(+) A-I      intronic chr20:44467715(+) A-I      intronic chr20:44467699(+) A-I      intronic chr20:44467678(+) A-I      intronic chr20:44467672(+) A-I      intronic chr20:44467662(+) A-I      intronic chr20:44468296(+) A-I      intronic chr20:44468145(+) A-I      intronic chr20:44465257(+) A-I      intronic chr20:44465239(+) A-I      intronic chr20:44468044(+) A-I      intronic chr20:44467658(+) A-I      intronic chr20:44467650(+) A-I      intronic chr20:44467613(+) A-I      intronic chr20:44467299(+) A-I      intronic chr20:44467278(+) A-I      intronic chr20:44467243(+) A-I      intronic chr20:44467231(+) A-I      intronic chr20:44468497(+) A-I      intronic chr20:44468493(+) A-I      intronic chr20:44468433(+) A-I      intronic chr20:44468427(+) A-I      intronic chr20:44468328(+) A-I      intronic chr20:44467228(+) A-I      intronic chr20:44468040(+) A-I      intronic chr20:44468034(+) A-I      intronic chr20:44468018(+) A-I      intronic chr20:44467991(+) A-I      intronic chr20:44467971(+) A-I      intronic chr20:44467967(+) A-I      intronic chr20:44467908(+) A-I      intronic chr20:44467899(+) A-I      intronic chr20:44468008(+) A-I      intronic chr20:44467596(+) A-I      intronic chr20:44467197(+) A-I      intronic chr20:44467808(+) A-I      intronic chr20:44467626(+) A-I      intronic chr20:44466850(+) A-I      intronic chr20:44467806(+) A-I      intronic chr20:44467556(+) A-I      intronic chr20:44467325(+) A-I      intronic chr20:44467619(+) A-I      intronic chr20:44465162(+) A-I      intronic chr20:44467900(+) A-I      intronic chr20:44465051(+) A-I      intronic chr20:44467314(+) A-I      intronic chr20:44467784(+) A-I      intronic chr20:44468489(+) A-I      intronic chr20:44468339(+) A-I      intronic chr20:44466431(+) A-I      intronic chr20:44468304(+) A-I      intronic chr20:44468534(+) A-I      intronic chr20:44465166(+) A-I      intronic chr20:44467318(+) A-I      intronic chr20:44467282(+) A-I      intronic chr20:44467897(+) A-I      intronic chr20:44467138(+) A-I      intronic chr20:44467607(+) A-I      intronic chr20:44467305(+) A-I      intronic chr20:44466545(+) A-I      intronic chr20:44467775(+) A-I      intronic chr20:44468096(+) A-I      intronic chr20:44468468(+) A-I      intronic chr20:44467343(+) A-I      intronic chr20:44468473(+) A-I      intronic chr20:44465220(+) A-I      intronic chr20:44466505(+) A-I      intronic chr20:44468291(+) A-I      intronic chr20:44466875(+) A-I      intronic chr20:44467794(+) A-I      intronic chr20:44467272(+) A-I      intronic chr20:44465252(+) A-I      intronic chr20:44465109(+) A-I      intronic chr20:44467262(+) A-I      intronic chr20:44467217(+) A-I      intronic chr20:44467637(+) A-I      intronic chr20:44467295(+) A-I      intronic chr20:44467732(+) A-I      intronic chr20:44468314(+) A-I      intronic chr20:44467237(+) A-I      intronic chr20:44468080(+) A-I      intronic chr20:44467793(+) A-I      intronic chr20:44468076(+) A-I      intronic chr20:44468425(+) A-I      intronic chr20:44467893(+) A-I      intronic chr20:44468528(+) A-I      intronic chr20:44466791(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SNX21	chr20:44465220(+) A-I intron -    21960545 chr20:44466922(+) A-I intron -    21960545 chr20:44467318(+) A-I intron -    21960545 chr20:44467325(+) A-I intron -    21960545 chr20:44467775(+) A-I intron -    21960545 chr20:44468492(+) A-I intron -    21960545 chr20:44466540(+) T-C intron -    22484847 chr20:44466544(+) T-C intron -    22484847 chr20:44466549(+) T-C intron -    22484847 chr20:44467001(+) T-C intron -    22484847 chr20:44468504(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNX21	chr20:44462492-44462493(+) m6A 5'UTR//exon       - chr20:44462532-44462533(+) m6A 5'UTR//exon       - chr20:44463678-44463679(+) m6A CDS//exon       24284625//24981863 chr20:44463735-44463736(+) m6A CDS//exon       24284625//24209618//24981863 chr20:44466908-44466909(+) m6A CDS//exon//intron       24284625//24209618//24981863 chr20:44466943-44466944(+) m6A CDS//exon//intron       24284625//24209618//24981863 chr20:44469086-44469087(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469306-44469307(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr20:44469350-44469351(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr20:44469371-44469372(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr20:44469451-44469452(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469530-44469531(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469539-44469540(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469668-44469669(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469722-44469723(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469773-44469774(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469845-44469846(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44469947-44469948(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44470012-44470013(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44470023-44470024(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:44470101-44470102(+) m6A 3'UTR//exon//intron       24284625//25456834//22608085 chr20:44470191-44470192(+) m6A 3'UTR//exon//intron       24284625 chr20:44470280-44470281(+) m6A 3'UTR//exon//intron       24284625 chr20:44470634-44470635(+) m6A exon//intron       24284625//24981863 chr20:44470667-44470668(+) m6A exon//intron       24284625//24209618//24981863 chr20:44470788-44470789(+) m6A 3'UTR//exon       24284625//24209618//24981863 chr20:44470887-44470888(+) m6A 3'UTR//exon       24284625//24981863 chr20:44470919-44470920(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr20:44470998-44470999(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr20:44471029-44471030(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr20:44471062-44471063(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr20:44471155-44471156(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr20:44471169-44471170(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr20:44471212-44471213(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H7-5p	Exosome K562 cells     24460325
	SNX21	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H7-5p
Interactor2: SNX21

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg