Basic Information:

  VIRBase ID:  

VHID00167184

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-5p:  MIMAT0014351          CHORDC1:  NM_001144073     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H7-5p	CHORDC1
miRBase Accession/Entrez ID	MIMAT0014351	26973
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHORDC1	chr11:89938945(-) A-I      5'UTR chr11:89946041(-) A-I      intronic chr11:89941576(-) A-I      5'UTR chr11:89946062(-) A-I      intronic chr11:89946046(-) A-I      intronic chr11:89946070(-) A-I      intronic chr11:89945193(-) A-I      intronic chr11:89946063(-) A-I      intronic chr11:89945201(-) A-I      intronic chr11:89955323(-) A-I      intronic chr11:89941562(-) A-I      5'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CHORDC1	chr11:89945293(-) A-I intron -    21960545 chr11:89946070(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHORDC1	chr11:89935596-89935597(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828 chr11:89935623-89935624(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828 chr11:89935647-89935648(-) m6A 3'UTR//CDS//exon       24981863//27773535 chr11:89936505-89936506(-) m6A 3'UTR//CDS//exon       27773535 chr11:89936518-89936519(-) m6A 3'UTR//CDS//exon       27773535 chr11:89936555-89936556(-) m6A 3'UTR//CDS//exon       27773535 chr11:89936571-89936572(-) m6A 3'UTR//CDS//exon       27773535 chr11:89938641-89938642(-) m6A 3'UTR//CDS//exon       27773535 chr11:89938651-89938652(-) m6A 3'UTR//CDS//exon       27773535 chr11:89938701-89938702(-) m6A 3'UTR//CDS//exon       27773535 chr11:89940209-89940210(-) m6A 5'UTR//intron       27773535 chr11:89940254-89940255(-) m6A 5'UTR//intron       27773535 chr11:89940316-89940317(-) m6A 5'UTR//intron       27773535 chr11:89940413-89940414(-) m6A 5'UTR//intron       27773535 chr11:89942090-89942091(-) m6A 5'UTR//intron       27773535 chr11:89942195-89942196(-) m6A 5'UTR//intron       27773535//22608085 chr11:89943732-89943733(-) m6A 5'UTR//CDS//exon       24981863//27773535 chr11:89943755-89943756(-) m6A 3'UTR//5'UTR//CDS//exon       24981863//27773535 chr11:89943837-89943838(-) m6A 5'UTR//exon//intron       27773535 chr11:89944413-89944414(-) m6A 3'UTR//CDS//exon       24981863 chr11:89944419-89944420(-) m6A 3'UTR//CDS//exon       24981863 chr11:89944434-89944435(-) m6A 3'UTR//CDS//exon       24981863 chr11:89944476-89944477(-) m6A CDS//exon       24981863 chr11:89947190-89947191(-) m6A 3'UTR//CDS//exon       24981863 chr11:89947232-89947233(-) m6A 3'UTR//CDS//exon       24981863 chr11:89947247-89947248(-) m6A 3'UTR//CDS//exon       24981863 chr11:89956070-89956071(-) m6A CDS//exon       24284625//24981863 chr11:89956207-89956208(-) m6A 5'UTR//exon       24284625//24981863 chr11:89956442-89956443(-) m6A 5'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H7-5p	Exosome K562 cells     24460325
	CHORDC1	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H7-5p
Interactor2: CHORDC1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg