Basic Information:

  VIRBase ID:  

VHID00165115

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          TCEANC2:  NR_130900     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	TCEANC2
miRBase Accession/Entrez ID	MIMAT0010205	127428
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf83

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TCEANC2	chr1:54565312(+) A-I      3'UTR chr1:54524920(+) A-I      intronic chr1:54522934(+) A-I      intronic chr1:54523098(+) A-I      intronic chr1:54524874(+) A-I      intronic chr1:54547155(+) A-I      intronic chr1:54550356(+) A-I      intronic chr1:54525809(+) A-I      intronic chr1:54525819(+) A-I      intronic chr1:54525826(+) A-I      intronic chr1:54525981(+) A-I      intronic chr1:54525986(+) A-I      intronic chr1:54547140(+) A-I      intronic chr1:54565241(+) A-I      3'UTR chr1:54565270(+) A-I      3'UTR chr1:54565266(+) A-I      3'UTR chr1:54565367(+) A-I      3'UTR chr1:54565274(+) A-I      3'UTR chr1:54565188(+) A-I      3'UTR chr1:54565366(+) A-I      3'UTR chr1:54565257(+) A-I      3'UTR chr1:54565399(+) A-I      3'UTR chr1:54565210(+) A-I      3'UTR chr1:54522576(+) A-I      intronic chr1:54531634(+) A-I      intronic chr1:54551573(+) A-I      intronic chr1:54522260(+) A-I      intronic chr1:54565329(+) A-I      3'UTR chr1:54531129(+) A-I      intronic chr1:54565361(+) A-I      3'UTR chr1:54565265(+) A-I      3'UTR chr1:54530404(+) A-I      intronic chr1:54565207(+) A-I      3'UTR chr1:54522180(+) A-I      intronic chr1:54565326(+) A-I      3'UTR chr1:54565159(+) A-I      3'UTR chr1:54525064(+) A-I      intronic chr1:54531775(+) A-I      intronic chr1:54522563(+) A-I      intronic chr1:54565256(+) A-I      3'UTR chr1:54531524(+) A-I      intronic chr1:54531774(+) A-I      intronic chr1:54565297(+) A-I      3'UTR chr1:54565306(+) A-I      3'UTR chr1:54525006(+) A-I      intronic chr1:54565153(+) A-I      3'UTR chr1:54565313(+) A-I      3'UTR chr1:54530560(+) A-I      intronic chr1:54565218(+) A-I      3'UTR chr1:54522594(+) A-I      intronic chr1:54565161(+) A-I      3'UTR chr1:54525825(+) A-I      intronic chr1:54522564(+) A-I      intronic chr1:54526191(+) A-I      intronic chr1:54522038(+) A-I      intronic chr1:54531822(+) A-I      intronic chr1:54526092(+) A-I      intronic chr1:54541688(+) A-I      intronic chr1:54540015(+) A-I      intronic chr1:54524410(+) A-I      intronic chr1:54565178(+) A-I      3'UTR chr1:54565296(+) A-I      3'UTR chr1:54551536(+) A-I      intronic chr1:54541656(+) A-I      intronic chr1:54565338(+) A-I      3'UTR chr1:54565162(+) A-I      3'UTR chr1:54531862(+) A-I      intronic chr1:54522183(+) A-I      intronic chr1:54546971(+) A-I      intronic chr1:54565362(+) A-I      3'UTR chr1:54541459(+) A-I      intronic chr1:54535193(+) A-I      intronic chr1:54523099(+) A-I      intronic chr1:54526199(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TCEANC2	chr1:54565159(+) A-G intron -    21725310 chr1:54522038(+) A-G intron -    22484847 chr1:54522260(+) A-G intron -    22484847 chr1:54522563(+) A-G intron -    22484847 chr1:54522564(+) A-G intron -    22484847 chr1:54522594(+) A-G intron -    22484847 chr1:54541656(+) A-G intron -    22484847 chr1:54565296(+) A-G intron -    22484847 chr1:54565361(+) A-G intron -    22484847 chr1:54565362(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TCEANC2	chr1:54519315-54519316(+) m6A 5'UTR//exon       24981863 chr1:54562131-54562132(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:54562281-54562282(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr1:54562307-54562308(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr1:54562454-54562455(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:54562464-54562465(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:54562526-54562527(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr1:54562594-54562595(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr1:54562706-54562707(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr1:54562756-54562757(+) m6A 3'UTR//intron       24981863//22608085 chr1:54563071-54563072(+) m6A 3'UTR//intron       24981863 chr1:54563095-54563096(+) m6A 3'UTR//intron       24981863 chr1:54563126-54563127(+) m6A 3'UTR//intron       24981863 chr1:54563232-54563233(+) m6A 3'UTR//intron       24981863 chr1:54563841-54563842(+) m6A 3'UTR//intron       - chr1:54563892-54563893(+) m6A 3'UTR//intron       - chr1:54563907-54563908(+) m6A 3'UTR//intron       - chr1:54563926-54563927(+) m6A 3'UTR//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TCEANC2	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: TCEANC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg