Basic Information:

  VIRBase ID:  

VHID00164942

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          ARMC6:  NM_001199196     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	ARMC6
miRBase Accession/Entrez ID	MIMAT0010205	93436
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	R30923_1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARMC6	chr19:19158868(+) A-I      intronic chr19:19148333(+) A-I      intronic chr19:19147919(+) A-I      intronic chr19:19148005(+) A-I      intronic chr19:19147943(+) A-I      intronic chr19:19147830(+) A-I      intronic chr19:19148315(+) A-I      intronic chr19:19148312(+) A-I      intronic chr19:19146974(+) A-I      intronic chr19:19147785(+) A-I      intronic chr19:19146971(+) A-I      intronic chr19:19145417(+) A-I      intronic chr19:19160754(+) A-I      intronic chr19:19147004(+) A-I      intronic chr19:19160712(+) A-I      intronic chr19:19160686(+) A-I      intronic chr19:19160680(+) A-I      intronic chr19:19160679(+) A-I      intronic chr19:19160671(+) A-I      intronic chr19:19148260(+) A-I      intronic chr19:19160051(+) A-I      intronic chr19:19159048(+) A-I      intronic chr19:19157819(+) A-I      intronic chr19:19157565(+) A-I      intronic chr19:19157506(+) A-I      intronic chr19:19157501(+) A-I      intronic chr19:19156044(+) A-I      intronic chr19:19149784(+) A-I      intronic chr19:19149443(+) A-I      intronic chr19:19147123(+) A-I      intronic chr19:19146975(+) A-I      intronic chr19:19160612(+) A-I      intronic chr19:19153213(+) A-I      intronic chr19:19160623(+) A-I      intronic chr19:19160758(+) A-I      intronic chr19:19146890(+) A-I      intronic chr19:19160675(+) A-I      intronic chr19:19147874(+) A-I      intronic chr19:19159931(+) A-I      intronic chr19:19148255(+) A-I      intronic chr19:19156013(+) A-I      intronic chr19:19153258(+) A-I      intronic chr19:19155950(+) A-I      intronic chr19:19160630(+) A-I      intronic chr19:19159966(+) A-I      intronic chr19:19159941(+) A-I      intronic chr19:19160059(+) A-I      intronic chr19:19156667(+) A-I      intronic chr19:19158867(+) A-I      intronic chr19:19160576(+) A-I      intronic chr19:19161285(+) A-I      intronic chr19:19160071(+) A-I      intronic chr19:19150045(+) A-I      intronic chr19:19160028(+) A-I      intronic chr19:19157856(+) A-I      intronic chr19:19160681(+) A-I      intronic chr19:19157484(+) A-I      intronic chr19:19160593(+) A-I      intronic chr19:19158837(+) A-I      intronic chr19:19159198(+) A-I      intronic chr19:19160726(+) A-I      intronic chr19:19160137(+) A-I      intronic chr19:19160582(+) A-I      intronic chr19:19156005(+) A-I      intronic chr19:19161287(+) A-I      intronic chr19:19147739(+) A-I      intronic chr19:19148395(+) A-I      intronic chr19:19158894(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ARMC6	chr19:19158894(+) A-G intron -    22484847 chr19:19160681(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARMC6	chr19:19144734-19144735(+) m6A 5'UTR//intron       24284625 chr19:19144992-19144993(+) m6A 5'UTR//intron       - chr19:19148396-19148397(+) m6A 5'UTR//CDS//intron       27773535 chr19:19153592-19153593(+) m6A 3'UTR//CDS//intron       24981863//22575960 chr19:19153617-19153618(+) m6A 3'UTR//CDS//intron       24284625//24981863//22575960 chr19:19162516-19162517(+) m6A 3'UTR//CDS       24284625 chr19:19162521-19162522(+) m6A 3'UTR//CDS       24284625 chr19:19162654-19162655(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19162662-19162663(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19162774-19162775(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19162780-19162781(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19162794-19162795(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19162968-19162969(+) m6A 3'UTR//CDS       24284625//22575960 chr19:19165001-19165002(+) m6A 3'UTR//CDS       - chr19:19168226-19168227(+) m6A CDS       24284625//25456834//22608085 chr19:19168249-19168250(+) m6A CDS       24284625//25456834//22608085 chr19:19168291-19168292(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr19:19168372-19168373(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:19168407-19168408(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARMC6	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: ARMC6

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg