Detail Information

Basic Information:


  VIRBase ID:  

VHID00164786

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:           PIGO:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H2 PIGO
miRBase
Accession/Entrez ID		 MIMAT0010205 84720
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - HPMRS2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIGO
chr9:35088794(-) A-I      3'UTR
chr9:35088806(-) A-I      3'UTR
chr9:35088827(-) A-I      3'UTR
chr9:35088814(-) A-I      3'UTR
chr9:35088741(-) A-I      3'UTR
chr9:35088809(-) A-I      3'UTR
chr9:35088710(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIGO
chr9:35089137(-) T-G exon CDS    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIGO
chr9:35088734-35088735(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr9:35088744-35088745(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr9:35088757-35088758(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr9:35088874-35088875(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22608085
chr9:35088923-35088924(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22608085
chr9:35088946-35088947(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr9:35089000-35089001(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr9:35089042-35089043(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr9:35090215-35090216(-) m6A CDS//exon//intron       24284625
chr9:35091440-35091441(-) m6A CDS//exon//intron       24284625//25456834//22608085
chr9:35091551-35091552(-) m6A CDS//exon//intron       24284625//25456834//24981863
chr9:35091557-35091558(-) m6A CDS//exon//intron       24284625//25456834//24981863
chr9:35092376-35092377(-) m6A CDS//exon//intron       24284625//25456834//24981863
chr9:35092386-35092387(-) m6A CDS//exon//intron       24284625//25456834//24981863
chr9:35093490-35093491(-) m6A CDS//exon       -
chr9:35093502-35093503(-) m6A CDS//exon       -
chr9:35093526-35093527(-) m6A CDS//exon       -
chr9:35093573-35093574(-) m6A CDS//exon       -
chr9:35095253-35095254(-) m6A CDS//exon       24284625//27773535
chr9:35095623-35095624(-) m6A exon//intron       24981863
chr9:35095972-35095973(-) m6A 5'UTR//exon//intron       24981863
chr9:35096006-35096007(-) m6A exon//intron       24981863
chr9:35096535-35096536(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PIGO
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H2
Interactor2: PIGO

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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