Basic Information:

  VIRBase ID:  

VHID00164464

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          CENPM:  NM_001304372     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	CENPM
miRBase Accession/Entrez ID	MIMAT0010205	79019
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C22orf18//CENP-M//PANE1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CENPM	chr22:42336486(-) A-I      intronic chr22:42336528(-) A-I      intronic chr22:42336583(-) A-I      intronic chr22:42336594(-) A-I      intronic chr22:42336622(-) A-I      intronic chr22:42336563(-) A-I      intronic chr22:42338565(-) A-I      intronic chr22:42338511(-) A-I      intronic chr22:42338510(-) A-I      intronic chr22:42338393(-) A-I      intronic chr22:42338358(-) A-I      intronic chr22:42336640(-) A-I      intronic chr22:42338721(-) A-I      intronic chr22:42336498(-) A-I      intronic chr22:42338937(-) A-I      intronic chr22:42336495(-) A-I      intronic chr22:42338611(-) A-I      intronic chr22:42338826(-) A-I      intronic chr22:42338708(-) A-I      intronic chr22:42338587(-) A-I      intronic chr22:42338698(-) A-I      intronic chr22:42338643(-) A-I      intronic chr22:42336617(-) A-I      intronic chr22:42338814(-) A-I      intronic chr22:42336458(-) A-I      intronic chr22:42336457(-) A-I      intronic chr22:42336674(-) A-I      intronic chr22:42336568(-) A-I      intronic chr22:42336425(-) A-I      intronic chr22:42336569(-) A-I      intronic chr22:42336514(-) A-I      intronic chr22:42336565(-) A-I      intronic chr22:42336627(-) A-I      intronic chr22:42336608(-) A-I      intronic chr22:42338932(-) A-I      intronic chr22:42336527(-) A-I      intronic chr22:42338882(-) A-I      intronic chr22:42338633(-) A-I      intronic chr22:42336567(-) A-I      intronic chr22:42336487(-) A-I      intronic chr22:42336572(-) A-I      intronic chr22:42338397(-) A-I      intronic chr22:42338823(-) A-I      intronic chr22:42336424(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CENPM	chr22:42337464(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CENPM	chr22:42334775-42334776(-) m6A 3'UTR       24981863//22608085 chr22:42334868-42334869(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085 chr22:42335005-42335006(-) m6A 3'UTR       24981863 chr22:42335043-42335044(-) Y 3'UTR       26075521 chr22:42335111-42335112(-) m6A 3'UTR//CDS       27371828 chr22:42336161-42336162(-) m6A CDS//intron       27371828 chr22:42342441-42342442(-) m6A CDS//exon       27773536 chr22:42342459-42342460(-) m6A 5'UTR//CDS//exon       27773536 chr22:42342669-42342670(-) m6A 5'UTR//intron       27773536 chr22:42343039-42343040(-) m6A CDS//exon       24981863//27773536 chr22:42343057-42343058(-) m6A CDS//exon       24981863//27773536 chr22:42343125-42343126(-) Am 5'UTR//exon       - chr22:42343141-42343142(-) m6A 5'UTR//exon       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CENPM	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: CENPM

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg