Basic Information:

  VIRBase ID:  

VHID00164370

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          SMOC2:  NM_001166412     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	SMOC2
miRBase Accession/Entrez ID	MIMAT0010205	64094
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA270C4A.1//bA37D8.1//dJ421D16.1//DTDP1//MST117//MSTP117//MSTP140//SMAP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMOC2	chr6:168922051(+) A-I      intronic chr6:168900888(+) A-I      intronic chr6:168989603(+) A-I      intronic chr6:169052535(+) A-I      intronic chr6:169057044(+) A-I      intronic chr6:169052534(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SMOC2	chr6:168841873-168841874(+) m6A 5'UTR       25456834 chr6:169053846-169053847(+) m6A 5'UTR//CDS       25456834 chr6:169053890-169053891(+) m6A 5'UTR//CDS//exon       25456834 chr6:169056087-169056088(+) m6A CDS//intron       25456834 chr6:169068172-169068173(+) m6A 3'UTR//CDS//intron       24209618//25456834//24981863 chr6:169068250-169068251(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr6:169068325-169068326(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr6:169068337-169068338(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr6:169068354-169068355(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr6:169068384-169068385(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr6:169068428-169068429(+) m6A 3'UTR//intron       24209618//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SMOC2	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: SMOC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg