Basic Information:

  VIRBase ID:  

VHID00164347

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          RIC8A:  NM_021932     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	RIC8A
miRBase Accession/Entrez ID	MIMAT0010205	60626
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RIC8

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RIC8A	chr11:207761(+) A-I      5'UTR chr11:208428(+) A-I      5'UTR chr11:207760(+) A-I      5'UTR chr11:208421(+) A-I      5'UTR chr11:208420(+) A-I      5'UTR chr11:207736(+) A-I      5'UTR chr11:208454(+) A-I      5'UTR chr11:207753(+) A-I      5'UTR chr11:208453(+) A-I      5'UTR chr11:207719(+) A-I      5'UTR chr11:207771(+) A-I      5'UTR chr11:208422(+) A-I      5'UTR chr11:207735(+) A-I      5'UTR chr11:207767(+) A-I      5'UTR chr11:208433(+) A-I      5'UTR chr11:213912(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RIC8A	chr11:207578-207579(+) m6A 5'UTR       24284625//24209618//24981863 chr11:207764-207765(+) Y 5'UTR       26075521 chr11:207803-207804(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr11:207963-207964(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:207982-207983(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:208084-208085(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:208114-208115(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:208130-208131(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:208247-208248(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:208363-208364(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:208386-208387(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:208432-208433(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22608085 chr11:208447-208448(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22608085 chr11:208466-208467(+) Y 5'UTR       26075521 chr11:208567-208568(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:208650-208651(+) m6A 5'UTR       24284625//27371828 chr11:208801-208802(+) m6A 5'UTR       24284625//25456834//24981863 chr11:209310-209311(+) m6A 3'UTR//5'UTR//CDS//exon       - chr11:209408-209409(+) m6A 3'UTR//5'UTR//CDS//exon//intron       - chr11:209438-209439(+) m6A 3'UTR//5'UTR//CDS//exon//intron       - chr11:209500-209501(+) m6A 3'UTR//5'UTR//CDS//exon       24284625//22575960 chr11:209515-209516(+) m6A 3'UTR//5'UTR//CDS//exon       24284625//22575960 chr11:209602-209603(+) m6A 3'UTR//5'UTR//CDS//exon       24284625//22575960 chr11:209893-209894(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085 chr11:209925-209926(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085 chr11:209974-209975(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085 chr11:210379-210380(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr11:210430-210431(+) m6A CDS//exon//intron       24284625 chr11:210440-210441(+) m6A CDS//exon//intron       24284625 chr11:210499-210500(+) m6A exon//intron       25456834 chr11:210550-210551(+) m6A exon//intron       25456834 chr11:210600-210601(+) m6A 3'UTR//CDS//exon       25456834 chr11:210640-210641(+) m6A 3'UTR//CDS//exon       24284625//25456834 chr11:210735-210736(+) m6A exon//intron       24284625 chr11:210741-210742(+) m6A exon//intron       24284625 chr11:211272-211273(+) m6A CDS//exon       24284625 chr11:212641-212642(+) m6A CDS//exon       24284625 chr11:212672-212673(+) m6A CDS//exon       24284625 chr11:212702-212703(+) m6A CDS//exon       24284625 chr11:212772-212773(+) m6A exon//intron       24284625 chr11:212944-212945(+) m6A CDS//exon       24284625//24981863 chr11:212950-212951(+) m6A CDS//exon       24284625//24981863 chr11:213051-213052(+) m6A exon//intron       24284625//24981863 chr11:213067-213068(+) m6A exon//intron       24284625//24981863 chr11:213294-213295(+) m6A exon//intron       24284625//24209618//24981863 chr11:213303-213304(+) m6A CDS//exon       24284625//24209618//24981863 chr11:213743-213744(+) m6A exon//intron       24209618 chr11:213766-213767(+) m6A exon//intron       24284625//24209618 chr11:214231-214232(+) m6A CDS//exon//intron       24284625//24209618//22575960 chr11:214302-214303(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:214327-214328(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:214339-214340(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:214380-214381(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:214399-214400(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:214474-214475(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:214536-214537(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:214561-214562(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:214789-214790(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr11:214799-214800(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr11:214822-214823(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr11:214898-214899(+) m6A 3'UTR       24284625//24209618//24981863 chr11:214975-214976(+) m6A 3'UTR       24284625//27773535 chr11:214996-214997(+) m6A 3'UTR       24284625//27773535 chr11:215076-215077(+) m6A 3'UTR       27773535 chr11:215106-215107(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RIC8A	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: RIC8A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg