Detail Information

Basic Information:


  VIRBase ID:  

VHID00163796

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:           THAP4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H2 THAP4
miRBase
Accession/Entrez ID		 MIMAT0010205 51078
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CGI-36//Nb(III)//PP238

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR THAP4
chr2:242533302(-) A-I      intronic
chr2:242533295(-) A-I      intronic
chr2:242564778(-) A-I      intronic
chr2:242534064(-) A-I      ncRNA
chr2:242534061(-) A-I      ncRNA
chr2:242564833(-) A-I      intronic
chr2:242538504(-) A-I      intronic
chr2:242570358(-) A-I      intronic
chr2:242571175(-) A-I      intronic
chr2:242570421(-) A-I      intronic
chr2:242570391(-) A-I      intronic
chr2:242570390(-) A-I      intronic
chr2:242570346(-) A-I      intronic
chr2:242570333(-) A-I      intronic
chr2:242570325(-) A-I      intronic
chr2:242570301(-) A-I      intronic
chr2:242568650(-) A-I      intronic
chr2:242566225(-) A-I      intronic
chr2:242566212(-) A-I      intronic
chr2:242565825(-) A-I      intronic
chr2:242565817(-) A-I      intronic
chr2:242565805(-) A-I      intronic
chr2:242565775(-) A-I      intronic
chr2:242565770(-) A-I      intronic
chr2:242565756(-) A-I      intronic
chr2:242565748(-) A-I      intronic
chr2:242565747(-) A-I      intronic
chr2:242565744(-) A-I      intronic
chr2:242565734(-) A-I      intronic
chr2:242564895(-) A-I      intronic
chr2:242563820(-) A-I      intronic
chr2:242562783(-) A-I      intronic
chr2:242562159(-) A-I      intronic
chr2:242561717(-) A-I      intronic
chr2:242538487(-) A-I      intronic
chr2:242534657(-) A-I      intronic
chr2:242534608(-) A-I      intronic
chr2:242534524(-) A-I      intronic
chr2:242534503(-) A-I      intronic
chr2:242534495(-) A-I      intronic
chr2:242534245(-) A-I      intronic
chr2:242534172(-) A-I      intronic
chr2:242533948(-) A-I      intronic
chr2:242533944(-) A-I      intronic
chr2:242533831(-) A-I      intronic
chr2:242533827(-) A-I      intronic
chr2:242533325(-) A-I      intronic
chr2:242533300(-) A-I      intronic
chr2:242561698(-) A-I      intronic
chr2:242561694(-) A-I      intronic
chr2:242538653(-) A-I      intronic
chr2:242538623(-) A-I      intronic
chr2:242563735(-) A-I      intronic
chr2:242570953(-) A-I      intronic
chr2:242534940(-) A-I      intronic
chr2:242562037(-) A-I      intronic
chr2:242536713(-) A-I      intronic
chr2:242534262(-) A-I      intronic
chr2:242565774(-) A-I      intronic
chr2:242535822(-) A-I      intronic
chr2:242533816(-) A-I      intronic
chr2:242534504(-) A-I      intronic
chr2:242564808(-) A-I      intronic
chr2:242532440(-) A-I      intronic
chr2:242566268(-) A-I      intronic
chr2:242564771(-) A-I      intronic
chr2:242569968(-) A-I      intronic
chr2:242571591(-) A-I      intronic
chr2:242533319(-) A-I      intronic
chr2:242566252(-) A-I      intronic
chr2:242533826(-) A-I      intronic
chr2:242562217(-) A-I      intronic
chr2:242551348(-) A-I      intronic
chr2:242570355(-) A-I      intronic
chr2:242571580(-) A-I      intronic
chr2:242532577(-) A-I      intronic
chr2:242551415(-) A-I      intronic
chr2:242533896(-) A-I      intronic
chr2:242571593(-) A-I      intronic
chr2:242536663(-) A-I      intronic
chr2:242533328(-) A-I      intronic
chr2:242536742(-) A-I      intronic
chr2:242536752(-) A-I      intronic
chr2:242534500(-) A-I      intronic
chr2:242565623(-) A-I      intronic
chr2:242563819(-) A-I      intronic
chr2:242571679(-) A-I      intronic
chr2:242532512(-) A-I      intronic
chr2:242532455(-) A-I      intronic
chr2:242562289(-) A-I      intronic
chr2:242562802(-) A-I      intronic
chr2:242570286(-) A-I      intronic
chr2:242562175(-) A-I      intronic
chr2:242533373(-) A-I      intronic
chr2:242533833(-) A-I      intronic
chr2:242527207(-) A-I      intronic
chr2:242562179(-) A-I      intronic
chr2:242571604(-) A-I      intronic
chr2:242534930(-) A-I      intronic
chr2:242566251(-) A-I      intronic
chr2:242570923(-) A-I      intronic
chr2:242566205(-) A-I      intronic
chr2:242562091(-) A-I      intronic
chr2:242571420(-) A-I      intronic
chr2:242538555(-) A-I      intronic
chr2:242570992(-) A-I      intronic
chr2:242533381(-) A-I      intronic
chr2:242534592(-) A-I      intronic
chr2:242532453(-) A-I      intronic
chr2:242536728(-) A-I      intronic
chr2:242534702(-) A-I      intronic
chr2:242561697(-) A-I      intronic
chr2:242544081(-) A-I      intronic
chr2:242534588(-) A-I      intronic
chr2:242562873(-) A-I      intronic
chr2:242571461(-) A-I      intronic
chr2:242532551(-) A-I      intronic
chr2:242533320(-) A-I      intronic
chr2:242562376(-) A-I      intronic
chr2:242570416(-) A-I      intronic
chr2:242534653(-) A-I      intronic
chr2:242533240(-) A-I      intronic
chr2:242571619(-) A-I      intronic
chr2:242533230(-) A-I      intronic
chr2:242533269(-) A-I      intronic
chr2:242571117(-) A-I      intronic
chr2:242564781(-) A-I      intronic
chr2:242527190(-) A-I      intronic
chr2:242564891(-) A-I      intronic
chr2:242540571(-) A-I      intronic
chr2:242553401(-) A-I      intronic
chr2:242533275(-) A-I      intronic
chr2:242571646(-) A-I      intronic
chr2:242562961(-) A-I      intronic
chr2:242564710(-) A-I      intronic
chr2:242534137(-) A-I      ncRNA
chr2:242534132(-) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED THAP4
chr2:242532455(-) A-G intron -    22484847
chr2:242532577(-) A-G intron -    22484847
chr2:242533240(-) A-G intron -    22484847
chr2:242533320(-) A-G intron -    22484847
chr2:242533346(-) A-G intron -    22484847
chr2:242533816(-) A-G intron -    22484847
chr2:242533826(-) A-G intron -    22484847
chr2:242534132(-) A-G intron -    22484847
chr2:242534262(-) A-G intron -    22484847
chr2:242534588(-) A-G intron -    22484847
chr2:242534592(-) A-G intron -    22484847
chr2:242536752(-) A-G intron -    22484847
chr2:242561697(-) A-G intron -    22484847
chr2:242562153(-) A-G intron -    22484847
chr2:242562175(-) A-G intron -    22484847
chr2:242562179(-) A-G intron -    22484847
chr2:242562217(-) A-G intron -    22484847
chr2:242562802(-) A-G intron -    22484847
chr2:242562887(-) A-G intron -    22484847
chr2:242563713(-) A-G intron -    22484847
chr2:242563735(-) A-G intron -    22484847
chr2:242563819(-) A-G intron -    22484847
chr2:242565623(-) A-G intron -    22484847
chr2:242565774(-) A-G intron -    22484847
chr2:242566205(-) A-G intron -    22484847
chr2:242566245(-) A-G intron -    22484847
chr2:242566251(-) A-G intron -    22484847
chr2:242566252(-) A-G intron -    22484847
chr2:242566268(-) A-G intron -    22484847
chr2:242569968(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase THAP4
chr2:242523865-242523866(-) m6A 3'UTR//exon       24284625//27773535
chr2:242523952-242523953(-) m6A 3'UTR//exon       24284625//27773535
chr2:242524019-242524020(-) m6A 3'UTR//exon       24284625//27773535
chr2:242524104-242524105(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr2:242542389-242542390(-) m6A CDS//exon//intron       27773535//27773536
chr2:242542473-242542474(-) m6A CDS       24284625//27773535//27371828//27773536
chr2:242545734-242545735(-) m6A CDS       24284625//27773535//27371828//27773536
chr2:242545807-242545808(-) m6A CDS       24284625//27773535//27371828//27773536
chr2:242545824-242545825(-) m6A CDS       24284625//27773535//27371828//27773536
chr2:242545872-242545873(-) m6A CDS       24284625//27371828//27773536
chr2:242556837-242556838(-) m6A 5'UTR//intron       24284625//27371828
chr2:242556865-242556866(-) m6A 5'UTR//intron       24284625//27371828
chr2:242556878-242556879(-) m6A 5'UTR//intron       24284625//27371828
chr2:242556902-242556903(-) m6A 5'UTR//intron       24284625//27371828
chr2:242572466-242572467(-) m1A CDS       26863196
chr2:242572507-242572508(-) m6A CDS       24284625//25456834//27371828//27773536//22575960
chr2:242572746-242572747(-) m6A 5'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242572773-242572774(-) m6A 5'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr2:242573037-242573038(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573051-242573052(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573170-242573171(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573229-242573230(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573359-242573360(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573383-242573384(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:242573429-242573430(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr2:242573479-242573480(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:242576406-242576407(-) m6A CDS       24284625//24209618//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate THAP4
Chromatin K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H2
Interactor2: THAP4

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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