Detail Information

Basic Information:


  VIRBase ID:  

VHID00163034

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:           RAPGEF5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H2 RAPGEF5
miRBase
Accession/Entrez ID		 MIMAT0010205 9771
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - GFR//MR-GEF//REPAC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAPGEF5
chr7:22209915(-) A-I      intronic
chr7:22209303(-) A-I      intronic
chr7:22209290(-) A-I      intronic
chr7:22209269(-) A-I      intronic
chr7:22209256(-) A-I      intronic
chr7:22209243(-) A-I      intronic
chr7:22209229(-) A-I      intronic
chr7:22209228(-) A-I      intronic
chr7:22205824(-) A-I      intronic
chr7:22205796(-) A-I      intronic
chr7:22205764(-) A-I      intronic
chr7:22205763(-) A-I      intronic
chr7:22201129(-) A-I      intronic
chr7:22201117(-) A-I      intronic
chr7:22201031(-) A-I      intronic
chr7:22199713(-) A-I      intronic
chr7:22199686(-) A-I      intronic
chr7:22199681(-) A-I      intronic
chr7:22199658(-) A-I      intronic
chr7:22199587(-) A-I      intronic
chr7:22199570(-) A-I      intronic
chr7:22198531(-) A-I      intronic
chr7:22198423(-) A-I      intronic
chr7:22198376(-) A-I      intronic
chr7:22198355(-) A-I      intronic
chr7:22165686(-) A-I      intronic
chr7:22165624(-) A-I      intronic
chr7:22165581(-) A-I      intronic
chr7:22165563(-) A-I      intronic
chr7:22166435(-) A-I      intronic
chr7:22283697(-) A-I      intronic
chr7:22283718(-) A-I      intronic
chr7:22283724(-) A-I      intronic
chr7:22283729(-) A-I      intronic
chr7:22166442(-) A-I      intronic
chr7:22166454(-) A-I      intronic
chr7:22198365(-) A-I      intronic
chr7:22198421(-) A-I      intronic
chr7:22198425(-) A-I      intronic
chr7:22198443(-) A-I      intronic
chr7:22203866(-) A-I      intronic
chr7:22203886(-) A-I      intronic
chr7:22205531(-) A-I      intronic
chr7:22205566(-) A-I      intronic
chr7:22328311(-) A-I      intronic
chr7:22328306(-) A-I      intronic
chr7:22283068(-) A-I      intronic
chr7:22283032(-) A-I      intronic
chr7:22283014(-) A-I      intronic
chr7:22282443(-) A-I      intronic
chr7:22282354(-) A-I      intronic
chr7:22203867(-) A-I      intronic
chr7:22225503(-) A-I      intronic
chr7:22282326(-) A-I      intronic
chr7:22280186(-) A-I      intronic
chr7:22280185(-) A-I      intronic
chr7:22280155(-) A-I      intronic
chr7:22280135(-) A-I      intronic
chr7:22280119(-) A-I      intronic
chr7:22279827(-) A-I      intronic
chr7:22279747(-) A-I      intronic
chr7:22279665(-) A-I      intronic
chr7:22279660(-) A-I      intronic
chr7:22229886(-) A-I      intronic
chr7:22229864(-) A-I      intronic
chr7:22229816(-) A-I      intronic
chr7:22229811(-) A-I      intronic
chr7:22229732(-) A-I      intronic
chr7:22229726(-) A-I      intronic
chr7:22228381(-) A-I      intronic
chr7:22228327(-) A-I      intronic
chr7:22228307(-) A-I      intronic
chr7:22228203(-) A-I      intronic
chr7:22225700(-) A-I      intronic
chr7:22225533(-) A-I      intronic
chr7:22222775(-) A-I      intronic
chr7:22211844(-) A-I      intronic
chr7:22209945(-) A-I      intronic
chr7:22209929(-) A-I      intronic
chr7:22209886(-) A-I      intronic
chr7:22209841(-) A-I      intronic
chr7:22279717(-) A-I      intronic
chr7:22198516(-) A-I      intronic
chr7:22211984(-) A-I      intronic
chr7:22198462(-) A-I      intronic
chr7:22209391(-) A-I      intronic
chr7:22279753(-) A-I      intronic
chr7:22225686(-) A-I      intronic
chr7:22328347(-) A-I      intronic
chr7:22211919(-) A-I      intronic
chr7:22205526(-) A-I      intronic
chr7:22198418(-) A-I      intronic
chr7:22209247(-) A-I      intronic
chr7:22299591(-) A-I      intronic
chr7:22198416(-) A-I      intronic
chr7:22203786(-) A-I      intronic
chr7:22282442(-) A-I      intronic
chr7:22198471(-) A-I      intronic
chr7:22199680(-) A-I      intronic
chr7:22209348(-) A-I      intronic
chr7:22165685(-) A-I      intronic
chr7:22199605(-) A-I      intronic
chr7:22203801(-) A-I      intronic
chr7:22211918(-) A-I      intronic
chr7:22212014(-) A-I      intronic
chr7:22166742(-) A-I      intronic
chr7:22279571(-) A-I      intronic
chr7:22165710(-) A-I      intronic
chr7:22199733(-) A-I      intronic
chr7:22314064(-) A-I      intronic
chr7:22211920(-) A-I      intronic
chr7:22209881(-) A-I      intronic
chr7:22203747(-) A-I      intronic
chr7:22283040(-) A-I      intronic
chr7:22166833(-) A-I      intronic
chr7:22340978(-) A-I      intronic
chr7:22312651(-) A-I      intronic
chr7:22229643(-) A-I      intronic
chr7:22166516(-) A-I      intronic
chr7:22361927(-) A-I      intronic
chr7:22209252(-) A-I      intronic
chr7:22209255(-) A-I      intronic
chr7:22209866(-) A-I      intronic
chr7:22209533(-) A-I      intronic
chr7:22228211(-) A-I      intronic
chr7:22198382(-) A-I      intronic
chr7:22165753(-) A-I      intronic
chr7:22201093(-) A-I      intronic
chr7:22280265(-) A-I      intronic
chr7:22282503(-) A-I      intronic
chr7:22251594(-) A-I      intronic
chr7:22199664(-) A-I      intronic
chr7:22211905(-) A-I      intronic
chr7:22209281(-) A-I      intronic
chr7:22166835(-) A-I      intronic
chr7:22282408(-) A-I      intronic
chr7:22273243(-) A-I      intronic
chr7:22203779(-) A-I      intronic
chr7:22198372(-) A-I      intronic
chr7:22283164(-) A-I      intronic
chr7:22166834(-) A-I      intronic
chr7:22279681(-) A-I      intronic
chr7:22203717(-) A-I      intronic
chr7:22203749(-) A-I      intronic
chr7:22283139(-) A-I      intronic
chr7:22198420(-) A-I      intronic
chr7:22268119(-) A-I      intronic
chr7:22225570(-) A-I      intronic
chr7:22273296(-) A-I      intronic
chr7:22311815(-) A-I      intronic
chr7:22203707(-) A-I      intronic
chr7:22282504(-) A-I      intronic
chr7:22201103(-) A-I      intronic
chr7:22209910(-) A-I      intronic
chr7:22209214(-) A-I      intronic
chr7:22203923(-) A-I      intronic
chr7:22209782(-) A-I      intronic
chr7:22328227(-) A-I      intronic
chr7:22282405(-) A-I      intronic
chr7:22198346(-) A-I      intronic
chr7:22299640(-) A-I      intronic
chr7:22165765(-) A-I      intronic
chr7:22283148(-) A-I      intronic
chr7:22328344(-) A-I      intronic
chr7:22203840(-) A-I      intronic
chr7:22199693(-) A-I      intronic
chr7:22228236(-) A-I      intronic
chr7:22203809(-) A-I      intronic
chr7:22201113(-) A-I      intronic
chr7:22198392(-) A-I      intronic
chr7:22225671(-) A-I      intronic
chr7:22205557(-) A-I      intronic
chr7:22280287(-) A-I      intronic
chr7:22205809(-) A-I      intronic
chr7:22251651(-) A-I      intronic
chr7:22199561(-) A-I      intronic
chr7:22166449(-) A-I      intronic
chr7:22211954(-) A-I      intronic
chr7:22205516(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAPGEF5
chr7:22209881(-) A-I intron -    22327324
chr7:22209899(-) A-I intron -    22327324
chr7:22239351(-) A-I intron -    22327324
chr7:22198468(-) A-I intron -    21960545
chr7:22198471(-) A-I intron -    21960545
chr7:22284501(-) A-I intron -    21960545
chr7:22323298(-) A-I intron -    21960545
chr7:22323300(-) A-I intron -    21960545
chr7:22323317(-) A-I intron -    21960545
chr7:22284942(-) A-G intron -    22484847
chr7:22284945(-) A-G intron -    22484847
chr7:22166356(-) A-G intron -    22484847
chr7:22198346(-) A-G intron -    22484847
chr7:22198416(-) A-G intron -    22484847
chr7:22198419(-) A-G intron -    22484847
chr7:22198422(-) A-G intron -    22484847
chr7:22198471(-) A-G intron -    22484847
chr7:22198519(-) A-G intron -    22484847
chr7:22199680(-) A-G intron -    22484847
chr7:22203749(-) A-G intron -    22484847
chr7:22203809(-) A-G intron -    22484847
chr7:22209247(-) A-G intron -    22484847
chr7:22209252(-) A-G intron -    22484847
chr7:22209255(-) A-G intron -    22484847
chr7:22209281(-) A-G intron -    22484847
chr7:22209841(-) A-G intron -    22484847
chr7:22209881(-) A-G intron -    22484847
chr7:22209886(-) A-G intron -    22484847
chr7:22209899(-) A-G intron -    22484847
chr7:22209910(-) A-G intron -    22484847
chr7:22209954(-) A-G intron -    22484847
chr7:22211917(-) A-G intron -    22484847
chr7:22228301(-) A-G intron -    22484847
chr7:22229815(-) A-G intron -    22484847
chr7:22264680(-) T-C intron -    22484847
chr7:22279611(-) A-G intron -    22484847
chr7:22279662(-) A-G intron -    22484847
chr7:22279753(-) A-G intron -    22484847
chr7:22282320(-) A-G intron -    22484847
chr7:22282408(-) A-G intron -    22484847
chr7:22282503(-) A-G intron -    22484847
chr7:22282504(-) A-G intron -    22484847
chr7:22282527(-) A-G intron -    22484847
chr7:22283040(-) A-G intron -    22484847
chr7:22283049(-) A-G intron -    22484847
chr7:22283139(-) A-G intron -    22484847
chr7:22283148(-) A-G intron -    22484847
chr7:22283164(-) A-G intron -    22484847
chr7:22283166(-) A-G intron -    22484847
chr7:22351896(-) G-A intron -    22484847
chr7:22351949(-) G-A intron -    22484847
chr7:22388711(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAPGEF5
chr7:22157925-22157926(-) m6A 3'UTR       27773535
chr7:22157937-22157938(-) m6A 3'UTR       27773535
chr7:22157957-22157958(-) m6A 3'UTR       27773535
chr7:22158008-22158009(-) m6A 3'UTR       27773535
chr7:22160559-22160560(-) m6A 3'UTR       27773535
chr7:22160716-22160717(-) m6A 3'UTR       27773535
chr7:22160721-22160722(-) m6A 3'UTR       27773535
chr7:22160755-22160756(-) m6A 3'UTR       27773535
chr7:22160775-22160776(-) m6A 3'UTR       27773535
chr7:22161432-22161433(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr7:22161468-22161469(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr7:22161560-22161561(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr7:22161576-22161577(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr7:22161648-22161649(-) m6A 3'UTR       24981863//27773535//22608085
chr7:22161699-22161700(-) m6A 3'UTR       24981863//27773535//22608085
chr7:22161704-22161705(-) m6A 3'UTR       24981863//27773535//22608085
chr7:22161816-22161817(-) m6A 3'UTR       25456834//24981863//27773535
chr7:22161904-22161905(-) m6A 3'UTR       25456834//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAPGEF5
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H2
Interactor2: RAPGEF5

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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