Basic Information:

  VIRBase ID:  

VHID00162822

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          EED:  NM_001308007     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	EED
miRBase Accession/Entrez ID	MIMAT0010205	8726
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	COGIS//HEED//WAIT1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EED	chr11:85974831(+) A-I      intronic chr11:85974807(+) A-I      intronic chr11:85969932(+) A-I      intronic chr11:85970110(+) A-I      intronic chr11:85964951(+) A-I      intronic chr11:85965022(+) A-I      intronic chr11:85965382(+) A-I      intronic chr11:85965621(+) A-I      intronic chr11:85965635(+) A-I      intronic chr11:85963865(+) A-I      intronic chr11:85970436(+) A-I      intronic chr11:85973623(+) A-I      intronic chr11:85964025(+) A-I      intronic chr11:85970074(+) A-I      intronic chr11:85964900(+) A-I      intronic chr11:85964835(+) A-I      intronic chr11:85965568(+) A-I      intronic chr11:85964818(+) A-I      intronic chr11:85964840(+) A-I      intronic chr11:85964861(+) A-I      intronic chr11:85964870(+) A-I      intronic chr11:85964925(+) A-I      intronic chr11:85970090(+) A-I      intronic chr11:85970075(+) A-I      intronic chr11:85983307(+) A-I      intronic chr11:85974809(+) A-I      intronic chr11:85964052(+) A-I      intronic chr11:85969654(+) A-I      intronic chr11:85974835(+) A-I      intronic chr11:85964943(+) A-I      intronic chr11:85974836(+) A-I      intronic chr11:85965480(+) A-I      intronic chr11:85969662(+) A-I      intronic chr11:85965830(+) A-I      intronic chr11:85973624(+) A-I      intronic chr11:85965839(+) A-I      intronic chr11:85965765(+) A-I      intronic chr11:85965729(+) A-I      intronic chr11:85965005(+) A-I      intronic chr11:85969727(+) A-I      intronic chr11:85965080(+) A-I      intronic chr11:85974777(+) A-I      intronic chr11:85964940(+) A-I      intronic chr11:85974837(+) A-I      intronic chr11:85964970(+) A-I      intronic chr11:85964956(+) A-I      intronic chr11:85973608(+) A-I      intronic chr11:85965623(+) A-I      intronic chr11:85973109(+) A-I      intronic chr11:85984145(+) A-I      intronic chr11:85973979(+) A-I      intronic chr11:85964930(+) A-I      intronic chr11:85970487(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	EED	chr11:85963865(+) A-G intron -    22484847 chr11:85964930(+) A-G intron -    22484847 chr11:85964956(+) A-G intron -    22484847 chr11:85971557(+) T-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EED	chr11:85955776-85955777(+) m6A 5'UTR       24981863 chr11:85955803-85955804(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr11:85955939-85955940(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:85955971-85955972(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:85955987-85955988(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:85956249-85956250(+) m6A 5'UTR       24209618//24981863//22575960 chr11:85956307-85956308(+) m6A CDS       24209618//24981863//22575960 chr11:85956353-85956354(+) m6A CDS//exon       24209618//24981863//22575960 chr11:85956365-85956366(+) m6A CDS//exon       24209618//24981863//22575960 chr11:85961368-85961369(+) m6A CDS//exon//intron       24209618//24981863//27773535//22575960 chr11:85961395-85961396(+) m6A CDS//exon//intron       24209618//24981863//27773535//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EED	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: EED

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg