Basic Information:

  VIRBase ID:  

VHID00162300

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H2:  MIMAT0010205          NOTCH1:  NM_017617     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H2	NOTCH1
miRBase Accession/Entrez ID	MIMAT0010205	4851
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AOS5//AOVD1//hN1//TAN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NOTCH1	chr9:139418701(-) A-I      intronic chr9:139418736(-) A-I      intronic chr9:139418676(-) A-I      intronic chr9:139418671(-) A-I      intronic chr9:139398768(-) A-I      intronic chr9:139432082(-) A-I      intronic chr9:139418711(-) A-I      intronic chr9:139418750(-) A-I      intronic chr9:139419218(-) A-I      intronic chr9:139432165(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NOTCH1	chr9:139389468-139389469(-) m6A 3'UTR       25456834//27371828 chr9:139389504-139389505(-) m6A 3'UTR       24284625//25456834//27371828//27773536 chr9:139389614-139389615(-) m6A 3'UTR       24284625//25456834//24981863//27371828 chr9:139389670-139389671(-) m6A 3'UTR       24284625//25456834//24981863//27371828 chr9:139389685-139389686(-) m6A 3'UTR       24284625//25456834//24981863//27371828 chr9:139390202-139390203(-) m6A 3'UTR       24981863//27773535 chr9:139390273-139390274(-) m6A 3'UTR       24981863//27773535 chr9:139390294-139390295(-) m6A 3'UTR       24284625//24981863//27773535 chr9:139390343-139390344(-) m6A 3'UTR       24284625//24981863//27773535 chr9:139390423-139390424(-) m6A 3'UTR       24284625//24981863//27773535 chr9:139390504-139390505(-) m6A 3'UTR       24284625//24981863 chr9:139390706-139390707(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//22575960 chr9:139390988-139390989(-) m6A CDS       24284625//24209618//25456834//24981863//27371828 chr9:139391003-139391004(-) m6A CDS       24284625//24209618//25456834//24981863//27371828 chr9:139391024-139391025(-) m6A CDS       24284625//24209618//25456834//24981863//27371828 chr9:139391046-139391047(-) m6A CDS       24284625//24209618//25456834//24981863//27371828 chr9:139391228-139391229(-) m6A CDS       24284625//25456834//24981863//27371828 chr9:139391388-139391389(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr9:139391588-139391589(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr9:139391615-139391616(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr9:139391666-139391667(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr9:139391909-139391910(-) m6A CDS       24284625//24981863//27371828//22575960 chr9:139391927-139391928(-) m6A CDS       24284625//24981863//27371828//22575960 chr9:139391945-139391946(-) m6A CDS       24284625//24981863//27371828//22575960 chr9:139391964-139391965(-) m6A CDS       24284625//22575960 chr9:139392003-139392004(-) m6A CDS       24284625//22575960 chr9:139393357-139393358(-) m6A CDS       24284625//22575960 chr9:139393414-139393415(-) m6A CDS       24284625 chr9:139393607-139393608(-) m6A CDS       24284625 chr9:139393685-139393686(-) m6A CDS       24284625 chr9:139393697-139393698(-) m6A CDS       24284625 chr9:139395064-139395065(-) m6A CDS       24284625 chr9:139395149-139395150(-) m6A CDS       - chr9:139395167-139395168(-) m6A CDS       - chr9:139396307-139396308(-) m6A CDS       27371828 chr9:139396325-139396326(-) m6A CDS       27371828 chr9:139396466-139396467(-) m6A CDS       27371828 chr9:139396474-139396475(-) m6A CDS       27371828 chr9:139399142-139399143(-) m6A CDS//exon       - chr9:139399463-139399464(-) m6A CDS       24284625//25456834//24981863//27371828 chr9:139399529-139399530(-) m6A CDS       24284625//25456834//27371828 chr9:139399881-139399882(-) m6A CDS       27371828 chr9:139400061-139400062(-) m6A CDS       24284625//27371828 chr9:139400143-139400144(-) m6A CDS       24284625//22575960 chr9:139404319-139404320(-) m6A CDS       27371828 chr9:139405128-139405129(-) m6A CDS       27371828 chr9:139405187-139405188(-) m6A CDS       27371828 chr9:139405251-139405252(-) m6A CDS       27371828 chr9:139405644-139405645(-) m6A CDS       27371828 chr9:139407887-139407888(-) m6A CDS       27371828 chr9:139407954-139407955(-) m6A CDS       27371828 chr9:139409783-139409784(-) Am CDS       - chr9:139409785-139409786(-) m6A CDS       - chr9:139409940-139409941(-) m6A CDS       - chr9:139409978-139409979(-) m6A CDS       24284625 chr9:139410033-139410034(-) m6A CDS       24284625 chr9:139410140-139410141(-) m6A CDS       - chr9:139413968-139413969(-) m6A CDS       - chr9:139414001-139414002(-) m6A CDS       - chr9:139417158-139417159(-) m6A exon//intron       - chr9:139418263-139418264(-) m6A CDS//exon       24284625 chr9:139418320-139418321(-) m6A CDS//exon       24284625 chr9:139418338-139418339(-) m6A CDS//exon       24284625 chr9:139418354-139418355(-) m6A CDS       24284625 chr9:139418395-139418396(-) m6A CDS       24284625 chr9:139438527-139438528(-) m6A CDS       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NOTCH1	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H2
Interactor2: NOTCH1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg