Detail Information

Basic Information:


  VIRBase ID:  

VHID00161406

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           CACUL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p CACUL1
miRBase
Accession/Entrez ID		 MIMAT0010204 143384
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - C10orf46//CAC1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CACUL1
chr10:120459971(-) A-I      intronic
chr10:120460107(-) A-I      intronic
chr10:120460172(-) A-I      intronic
chr10:120459186(-) A-I      intronic
chr10:120459187(-) A-I      intronic
chr10:120459209(-) A-I      intronic
chr10:120504347(-) A-I      intronic
chr10:120503774(-) A-I      intronic
chr10:120503125(-) A-I      intronic
chr10:120484897(-) A-I      intronic
chr10:120459229(-) A-I      intronic
chr10:120467553(-) A-I      intronic
chr10:120459389(-) A-I      intronic
chr10:120475504(-) A-I      intronic
chr10:120503836(-) A-I      intronic
chr10:120481734(-) A-I      intronic
chr10:120467578(-) A-I      intronic
chr10:120467561(-) A-I      intronic
chr10:120479169(-) A-I      intronic
chr10:120478290(-) A-I      intronic
chr10:120450314(-) A-I      intronic
chr10:120478281(-) A-I      intronic
chr10:120453571(-) A-I      intronic
chr10:120496013(-) A-I      intronic
chr10:120467545(-) A-I      intronic
chr10:120479201(-) A-I      intronic
chr10:120503846(-) A-I      intronic
chr10:120459262(-) A-I      intronic
chr10:120481717(-) A-I      intronic
chr10:120460129(-) A-I      intronic
chr10:120481698(-) A-I      intronic
chr10:120504260(-) A-I      intronic
chr10:120451212(-) A-I      intronic
chr10:120459973(-) A-I      intronic
chr10:120469483(-) A-I      intronic
chr10:120459397(-) A-I      intronic
chr10:120455970(-) A-I      intronic
chr10:120455973(-) A-I      intronic
chr10:120456114(-) A-I      intronic
chr10:120459253(-) A-I      intronic
chr10:120503647(-) A-I      intronic
chr10:120469569(-) A-I      intronic
chr10:120460166(-) A-I      intronic
chr10:120504345(-) A-I      intronic
chr10:120459296(-) A-I      intronic
chr10:120453474(-) A-I      intronic
chr10:120470654(-) A-I      intronic
chr10:120462273(-) A-I      intronic
chr10:120504371(-) A-I      intronic
chr10:120503835(-) A-I      intronic
chr10:120503731(-) A-I      intronic
chr10:120470659(-) A-I      intronic
chr10:120496026(-) A-I      intronic
chr10:120504244(-) A-I      intronic
chr10:120476395(-) A-I      intronic
chr10:120460105(-) A-I      intronic
chr10:120503838(-) A-I      intronic
chr10:120469563(-) A-I      intronic
chr10:120504346(-) A-I      intronic
chr10:120484896(-) A-I      intronic
chr10:120499954(-) A-I      intronic
chr10:120504305(-) A-I      intronic
chr10:120476386(-) A-I      intronic
chr10:120459441(-) A-I      intronic
chr10:120467455(-) A-I      intronic
chr10:120504308(-) A-I      intronic
chr10:120496073(-) A-I      intronic
chr10:120503773(-) A-I      intronic
chr10:120459322(-) A-I      intronic
chr10:120496036(-) A-I      intronic
chr10:120460117(-) A-I      intronic
chr10:120478357(-) A-I      intronic
chr10:120440733(-) A-I      3'UTR
chr10:120442945(-) A-I      3'UTR
chr10:120469475(-) A-I      intronic
chr10:120443085(-) A-I      3'UTR
chr10:120503733(-) A-I      intronic
chr10:120460045(-) A-I      intronic
chr10:120443036(-) A-I      3'UTR
chr10:120443079(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CACUL1
chr10:120440535-120440536(-) m6A 3'UTR//intron       27773535//27371828
chr10:120440638-120440639(-) m6A 3'UTR//intron       27773535
chr10:120440655-120440656(-) m6A 3'UTR//intron       27773535
chr10:120441085-120441086(-) m6A 3'UTR//intron       27773535//22608085
chr10:120441128-120441129(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr10:120441178-120441179(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr10:120441290-120441291(-) m6A 3'UTR//intron       24284625//27773535//27371828//22608085
chr10:120441311-120441312(-) m6A 3'UTR//intron       24284625//27773535//27371828//22608085
chr10:120441337-120441338(-) m6A 3'UTR//intron       24284625//27773535//27371828//22608085
chr10:120441402-120441403(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr10:120443941-120443942(-) m6A 3'UTR//intron       24981863//22608085
chr10:120443963-120443964(-) m6A 3'UTR//intron       24981863//22608085
chr10:120443969-120443970(-) m6A 3'UTR//intron       24981863//22608085
chr10:120443988-120443989(-) m6A 3'UTR//intron       24981863//22608085
chr10:120444028-120444029(-) m6A 3'UTR//intron       24981863//22608085
chr10:120444039-120444040(-) m6A 3'UTR//intron       24981863//22608085
chr10:120445161-120445162(-) m6A 3'UTR//intron       27773535
chr10:120445206-120445207(-) m6A 3'UTR//intron       27773535
chr10:120445259-120445260(-) m6A 3'UTR//intron       27773535
chr10:120445419-120445420(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:120445443-120445444(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:120445472-120445473(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:120445478-120445479(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:120445505-120445506(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:120445582-120445583(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr10:120445601-120445602(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr10:120514077-120514078(-) m6A CDS       24284625//24209618//27371828//27773536//22608085
chr10:120514212-120514213(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr10:120514321-120514322(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr10:120514414-120514415(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr10:120514484-120514485(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CACUL1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: CACUL1

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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