Basic Information:

  VIRBase ID:  

VHID00161338

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          LRRC8C:  NM_032270     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	LRRC8C
miRBase Accession/Entrez ID	MIMAT0010204	84230
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AD158//FAD158

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRRC8C	chr1:90105672(+) A-I      intronic chr1:90108205(+) A-I      intronic chr1:90108211(+) A-I      intronic chr1:90108325(+) A-I      intronic chr1:90108426(+) A-I      intronic chr1:90108497(+) A-I      intronic chr1:90108699(+) A-I      intronic chr1:90108715(+) A-I      intronic chr1:90108751(+) A-I      intronic chr1:90108792(+) A-I      intronic chr1:90108808(+) A-I      intronic chr1:90113517(+) A-I      intronic chr1:90124724(+) A-I      intronic chr1:90144866(+) A-I      intronic chr1:90144879(+) A-I      intronic chr1:90144890(+) A-I      intronic chr1:90146223(+) A-I      intronic chr1:90155338(+) A-I      intronic chr1:90155428(+) A-I      intronic chr1:90155433(+) A-I      intronic chr1:90159328(+) A-I      intronic chr1:90159413(+) A-I      intronic chr1:90166781(+) A-I      intronic chr1:90166789(+) A-I      intronic chr1:90168206(+) A-I      intronic chr1:90168223(+) A-I      intronic chr1:90177892(+) A-I      intronic chr1:90166856(+) A-I      intronic chr1:90149011(+) A-I      intronic chr1:90149016(+) A-I      intronic chr1:90177894(+) A-I      intronic chr1:90155251(+) A-I      intronic chr1:90155335(+) A-I      intronic chr1:90149034(+) A-I      intronic chr1:90145052(+) A-I      intronic chr1:90144005(+) A-I      intronic chr1:90166984(+) A-I      intronic chr1:90172918(+) A-I      intronic chr1:90159316(+) A-I      intronic chr1:90172688(+) A-I      intronic chr1:90144948(+) A-I      intronic chr1:90108780(+) A-I      intronic chr1:90108790(+) A-I      intronic chr1:90109875(+) A-I      intronic chr1:90104674(+) A-I      intronic chr1:90166970(+) A-I      intronic chr1:90116965(+) A-I      intronic chr1:90144937(+) A-I      intronic chr1:90108286(+) A-I      intronic chr1:90166947(+) A-I      intronic chr1:90155421(+) A-I      intronic chr1:90108707(+) A-I      intronic chr1:90144992(+) A-I      intronic chr1:90108852(+) A-I      intronic chr1:90113505(+) A-I      intronic chr1:90144961(+) A-I      intronic chr1:90108903(+) A-I      intronic chr1:90108225(+) A-I      intronic chr1:90105750(+) A-I      intronic chr1:90108456(+) A-I      intronic chr1:90177946(+) A-I      intronic chr1:90108796(+) A-I      intronic chr1:90108296(+) A-I      intronic chr1:90144966(+) A-I      intronic chr1:90146178(+) A-I      intronic chr1:90113481(+) A-I      intronic chr1:90108206(+) A-I      intronic chr1:90105724(+) A-I      intronic chr1:90108902(+) A-I      intronic chr1:90125899(+) A-I      intronic chr1:90108862(+) A-I      intronic chr1:90108547(+) A-I      intronic chr1:90125892(+) A-I      intronic chr1:90105723(+) A-I      intronic chr1:90116980(+) A-I      intronic chr1:90108728(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRRC8C	chr1:90125892(+) A-G intron -    22484847 chr1:90125899(+) A-G intron -    22484847 chr1:90105723(+) A-G intron -    22484847 chr1:90105724(+) A-G intron -    22484847 chr1:90105750(+) A-G intron -    22484847 chr1:90105865(+) A-T intron -    22484847 chr1:90108206(+) A-G intron -    22484847 chr1:90108225(+) A-G intron -    22484847 chr1:90108707(+) A-G intron -    22484847 chr1:90108728(+) A-G intron -    22484847 chr1:90108852(+) A-G intron -    22484847 chr1:90108862(+) A-G intron -    22484847 chr1:90124618(+) T-G intron -    22484847 chr1:90124620(+) T-G intron -    22484847 chr1:90159316(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRC8C	chr1:90178277-90178278(+) m6A CDS//intron       - chr1:90178319-90178320(+) m6A CDS//intron       24284625//24981863 chr1:90178383-90178384(+) m6A CDS//intron       24284625//24981863//22608085 chr1:90178429-90178430(+) m6A CDS//intron       24284625//24981863//22608085 chr1:90178439-90178440(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90178596-90178597(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90178639-90178640(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90178673-90178674(+) m6A CDS//intron       24981863//22608085 chr1:90178688-90178689(+) m6A CDS//intron       24981863//22608085 chr1:90178700-90178701(+) m6A CDS//intron       24981863//22608085 chr1:90178709-90178710(+) m6A CDS//intron       24981863//22608085 chr1:90178742-90178743(+) m6A CDS//intron       24981863//22608085 chr1:90178924-90178925(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179003-90179004(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179015-90179016(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179024-90179025(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179042-90179043(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179082-90179083(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90179200-90179201(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179321-90179322(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179339-90179340(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179356-90179357(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179367-90179368(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179386-90179387(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179441-90179442(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179478-90179479(+) m6A CDS//intron       24284625//24981863//26404942//22608085 chr1:90179528-90179529(+) m6A CDS//intron       24981863//26404942//22608085 chr1:90179603-90179604(+) m6A CDS//intron       24981863//22608085 chr1:90179643-90179644(+) m6A CDS//intron       24981863 chr1:90179981-90179982(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90179993-90179994(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90180057-90180058(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90180102-90180103(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90180194-90180195(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr1:90180300-90180301(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90180318-90180319(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90180325-90180326(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90180344-90180345(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:90180438-90180439(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:90180499-90180500(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:90180532-90180533(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:90180568-90180569(+) m6A 3'UTR//intron       24209618//24981863//22608085 chr1:90183792-90183793(+) Y 3'UTR//intron       26075521 chr1:90227684-90227685(+) m6A exon       - chr1:90227705-90227706(+) m6A exon       24284625 chr1:90227715-90227716(+) m6A exon       24284625 chr1:90228291-90228292(+) m6A exon       - chr1:90228298-90228299(+) m6A exon       - chr1:90228309-90228310(+) m6A exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRRC8C	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: LRRC8C

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg