Basic Information:

  VIRBase ID:  

VHID00161327

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          FAHD1:  NM_031208     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	FAHD1
miRBase Accession/Entrez ID	MIMAT0010204	81889
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C16orf36//YISKL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAHD1	chr16:1885027(+) A-I      intronic chr16:1885022(+) A-I      intronic chr16:1885031(+) A-I      intronic chr16:1885091(+) A-I      intronic chr16:1880138(+) A-I      intronic chr16:1885074(+) A-I      intronic chr16:1885073(+) A-I      intronic chr16:1885069(+) A-I      intronic chr16:1885033(+) A-I      intronic chr16:1879926(+) A-I      intronic chr16:1879999(+) A-I      intronic chr16:1880074(+) A-I      intronic chr16:1880099(+) A-I      intronic chr16:1885094(+) A-I      intronic chr16:1879944(+) A-I      intronic chr16:1885201(+) A-I      intronic chr16:1885170(+) A-I      intronic chr16:1887467(+) A-I      intronic chr16:1887459(+) A-I      intronic chr16:1883769(+) A-I      intronic chr16:1882650(+) A-I      intronic chr16:1882379(+) A-I      intronic chr16:1879929(+) A-I      intronic chr16:1882532(+) A-I      intronic chr16:1882581(+) A-I      intronic chr16:1879958(+) A-I      intronic chr16:1883823(+) A-I      intronic chr16:1883829(+) A-I      intronic chr16:1882446(+) A-I      intronic chr16:1882586(+) A-I      intronic chr16:1880038(+) A-I      intronic chr16:1882363(+) A-I      intronic chr16:1882641(+) A-I      intronic chr16:1883187(+) A-I      intronic chr16:1878161(+) A-I      3'UTR chr16:1878221(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FAHD1	chr16:1878295(+) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAHD1	chr16:1877145-1877146(+) m6A 5'UTR       24284625//24981863 chr16:1877285-1877286(+) m6A CDS       24284625//24981863//22608085 chr16:1877306-1877307(+) m6A CDS       24284625//24981863//22608085 chr16:1877315-1877316(+) m6A CDS       24284625//24981863//22608085 chr16:1877504-1877505(+) m6A CDS       24284625//22575960 chr16:1877587-1877588(+) m6A CDS       24284625//24981863//22575960//22608085 chr16:1877694-1877695(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr16:1877700-1877701(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr16:1877713-1877714(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr16:1877729-1877730(+) Y CDS       26075521 chr16:1877820-1877821(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr16:1877839-1877840(+) Gm CDS       - chr16:1877943-1877944(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr16:1877990-1877991(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr16:1878081-1878082(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr16:1878104-1878105(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr16:1878202-1878203(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr16:1878265-1878266(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:1878297-1878298(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:1878350-1878351(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr16:1878396-1878397(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr16:1878424-1878425(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr16:1878436-1878437(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr16:1878452-1878453(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr16:1878468-1878469(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:1878483-1878484(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:1878532-1878533(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr16:1878544-1878545(+) m6A 3'UTR//intron       24284625//24981863//27773535//22575960//22608085 chr16:1878660-1878661(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:1878748-1878749(+) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085 chr16:1878796-1878797(+) m6A 3'UTR//intron       24981863//27773535//22608085 chr16:1878841-1878842(+) m6A 3'UTR//intron       24981863//27773535 chr16:1889294-1889295(+) m6A 3'UTR//CDS       22608085 chr16:1889348-1889349(+) m6A 3'UTR       24981863//22608085 chr16:1889358-1889359(+) m6A 3'UTR       24981863//22608085 chr16:1889438-1889439(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889449-1889450(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889455-1889456(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889523-1889524(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889545-1889546(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889580-1889581(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889593-1889594(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889601-1889602(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889640-1889641(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889770-1889771(+) m6A 3'UTR       24209618//24981863//22608085 chr16:1889795-1889796(+) m6A 3'UTR       24981863//22608085 chr16:1889861-1889862(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAHD1	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: FAHD1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg