Basic Information:

  VIRBase ID:  

VHID00161322

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          CMIP:  NM_198390     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	CMIP
miRBase Accession/Entrez ID	MIMAT0010204	80790
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TCMIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CMIP	chr16:81537977(+) A-I      intronic chr16:81538019(+) A-I      intronic chr16:81538039(+) A-I      intronic chr16:81538040(+) A-I      intronic chr16:81706403(+) A-I      intronic chr16:81594741(+) A-I      intronic chr16:81594743(+) A-I      intronic chr16:81629058(+) A-I      intronic chr16:81629053(+) A-I      intronic chr16:81537998(+) A-I      intronic chr16:81581878(+) A-I      intronic chr16:81594749(+) A-I      intronic chr16:81509635(+) A-I      intronic chr16:81537730(+) A-I      intronic chr16:81594760(+) A-I      intronic chr16:81537056(+) A-I      intronic chr16:81537724(+) A-I      intronic chr16:81538009(+) A-I      intronic chr16:81538090(+) A-I      intronic chr16:81537851(+) A-I      intronic chr16:81537771(+) A-I      intronic chr16:81537754(+) A-I      intronic chr16:81537192(+) A-I      intronic chr16:81594085(+) A-I      intronic chr16:81724411(+) A-I      intronic chr16:81717230(+) A-I      intronic chr16:81582295(+) A-I      intronic chr16:81715937(+) A-I      intronic chr16:81715936(+) A-I      intronic chr16:81715906(+) A-I      intronic chr16:81715687(+) A-I      intronic chr16:81707023(+) A-I      intronic chr16:81707002(+) A-I      intronic chr16:81706972(+) A-I      intronic chr16:81706925(+) A-I      intronic chr16:81706421(+) A-I      intronic chr16:81636814(+) A-I      intronic chr16:81706293(+) A-I      intronic chr16:81706195(+) A-I      intronic chr16:81704648(+) A-I      intronic chr16:81716082(+) A-I      intronic chr16:81629229(+) A-I      intronic chr16:81629057(+) A-I      intronic chr16:81704643(+) A-I      intronic chr16:81535400(+) A-I      intronic chr16:81693943(+) A-I      intronic chr16:81636949(+) A-I      intronic chr16:81618840(+) A-I      intronic chr16:81614168(+) A-I      intronic chr16:81613403(+) A-I      intronic chr16:81594734(+) A-I      intronic chr16:81594097(+) A-I      intronic chr16:81594084(+) A-I      intronic chr16:81594034(+) A-I      intronic chr16:81594030(+) A-I      intronic chr16:81593646(+) A-I      intronic chr16:81593524(+) A-I      intronic chr16:81593498(+) A-I      intronic chr16:81581843(+) A-I      intronic chr16:81581787(+) A-I      intronic chr16:81571097(+) A-I      intronic chr16:81571029(+) A-I      intronic chr16:81558503(+) A-I      intronic chr16:81558479(+) A-I      intronic chr16:81558478(+) A-I      intronic chr16:81552761(+) A-I      intronic chr16:81552637(+) A-I      intronic chr16:81552545(+) A-I      intronic chr16:81552393(+) A-I      intronic chr16:81546487(+) A-I      intronic chr16:81537669(+) A-I      intronic chr16:81546483(+) A-I      intronic chr16:81546481(+) A-I      intronic chr16:81540802(+) A-I      intronic chr16:81540670(+) A-I      intronic chr16:81540425(+) A-I      intronic chr16:81540416(+) A-I      intronic chr16:81540286(+) A-I      intronic chr16:81538258(+) A-I      intronic chr16:81538154(+) A-I      intronic chr16:81538137(+) A-I      intronic chr16:81538092(+) A-I      intronic chr16:81515613(+) A-I      intronic chr16:81515636(+) A-I      intronic chr16:81540340(+) A-I      intronic chr16:81540265(+) A-I      intronic chr16:81593685(+) A-I      intronic chr16:81593593(+) A-I      intronic chr16:81552348(+) A-I      intronic chr16:81552512(+) A-I      intronic chr16:81715908(+) A-I      intronic chr16:81540264(+) A-I      intronic chr16:81724410(+) A-I      intronic chr16:81571019(+) A-I      intronic chr16:81535479(+) A-I      intronic chr16:81570878(+) A-I      intronic chr16:81552843(+) A-I      intronic chr16:81604876(+) A-I      intronic chr16:81535427(+) A-I      intronic chr16:81609918(+) A-I      intronic chr16:81537820(+) A-I      intronic chr16:81719352(+) A-I      intronic chr16:81724157(+) A-I      intronic chr16:81706280(+) A-I      intronic chr16:81724408(+) A-I      intronic chr16:81535334(+) A-I      intronic chr16:81706314(+) A-I      intronic chr16:81510787(+) A-I      intronic chr16:81538088(+) A-I      intronic chr16:81706397(+) A-I      intronic chr16:81537114(+) A-I      intronic chr16:81515645(+) A-I      intronic chr16:81552558(+) A-I      intronic chr16:81581839(+) A-I      intronic chr16:81514071(+) A-I      intronic chr16:81715647(+) A-I      intronic chr16:81662731(+) A-I      intronic chr16:81593543(+) A-I      intronic chr16:81545278(+) A-I      intronic chr16:81570993(+) A-I      intronic chr16:81581872(+) A-I      intronic chr16:81559200(+) A-I      intronic chr16:81581806(+) A-I      intronic chr16:81540389(+) A-I      intronic chr16:81724202(+) A-I      intronic chr16:81537102(+) A-I      intronic chr16:81594795(+) A-I      intronic chr16:81571230(+) A-I      intronic chr16:81593591(+) A-I      intronic chr16:81706939(+) A-I      intronic chr16:81614270(+) A-I      intronic chr16:81706281(+) A-I      intronic chr16:81538173(+) A-I      intronic chr16:81537095(+) A-I      intronic chr16:81630061(+) A-I      intronic chr16:81552783(+) A-I      intronic chr16:81535320(+) A-I      intronic chr16:81571215(+) A-I      intronic chr16:81715572(+) A-I      intronic chr16:81537810(+) A-I      intronic chr16:81552535(+) A-I      intronic chr16:81538086(+) A-I      intronic chr16:81499940(+) A-I      intronic chr16:81552522(+) A-I      intronic chr16:81574069(+) A-I      intronic chr16:81707010(+) A-I      intronic chr16:81593566(+) A-I      intronic chr16:81614070(+) A-I      intronic chr16:81552698(+) A-I      intronic chr16:81606773(+) A-I      intronic chr16:81501358(+) A-I      intronic chr16:81581838(+) A-I      intronic chr16:81613506(+) A-I      intronic chr16:81552473(+) A-I      intronic chr16:81614042(+) A-I      intronic chr16:81552797(+) A-I      intronic chr16:81539480(+) A-I      intronic chr16:81552511(+) A-I      intronic chr16:81618771(+) A-I      intronic chr16:81537919(+) A-I      intronic chr16:81537141(+) A-I      intronic chr16:81535356(+) A-I      intronic chr16:81606793(+) A-I      intronic chr16:81582190(+) A-I      intronic chr16:81537901(+) A-I      intronic chr16:81706849(+) A-I      intronic chr16:81537913(+) A-I      intronic chr16:81524180(+) A-I      intronic chr16:81537711(+) A-I      intronic chr16:81540336(+) A-I      intronic chr16:81537706(+) A-I      intronic chr16:81515583(+) A-I      intronic chr16:81537676(+) A-I      intronic chr16:81538028(+) A-I      intronic chr16:81707014(+) A-I      intronic chr16:81614059(+) A-I      intronic chr16:81630000(+) A-I      intronic chr16:81540363(+) A-I      intronic chr16:81593633(+) A-I      intronic chr16:81538089(+) A-I      intronic chr16:81614347(+) A-I      intronic chr16:81636893(+) A-I      intronic chr16:81606680(+) A-I      intronic chr16:81614353(+) A-I      intronic chr16:81537237(+) A-I      intronic chr16:81724275(+) A-I      intronic chr16:81582191(+) A-I      intronic chr16:81537784(+) A-I      intronic chr16:81538083(+) A-I      intronic chr16:81717099(+) A-I      intronic chr16:81582232(+) A-I      intronic chr16:81537721(+) A-I      intronic chr16:81537837(+) A-I      intronic chr16:81571061(+) A-I      intronic chr16:81715780(+) A-I      intronic chr16:81706250(+) A-I      intronic chr16:81614043(+) A-I      intronic chr16:81593963(+) A-I      intronic chr16:81593953(+) A-I      intronic chr16:81535281(+) A-I      intronic chr16:81717094(+) A-I      intronic chr16:81537852(+) A-I      intronic chr16:81582260(+) A-I      intronic chr16:81716050(+) A-I      intronic chr16:81509605(+) A-I      intronic chr16:81538169(+) A-I      intronic chr16:81614367(+) A-I      intronic chr16:81571197(+) A-I      intronic chr16:81629097(+) A-I      intronic chr16:81538015(+) A-I      intronic chr16:81537702(+) A-I      intronic chr16:81724178(+) A-I      intronic chr16:81535310(+) A-I      intronic chr16:81618769(+) A-I      intronic chr16:81709076(+) A-I      intronic chr16:81515719(+) A-I      intronic chr16:81537781(+) A-I      intronic chr16:81537896(+) A-I      intronic chr16:81604924(+) A-I      intronic chr16:81724183(+) A-I      intronic chr16:81507570(+) A-I      intronic chr16:81706859(+) A-I      intronic chr16:81537143(+) A-I      intronic chr16:81660970(+) A-I      intronic chr16:81593576(+) A-I      intronic chr16:81646103(+) A-I      intronic chr16:81538087(+) A-I      intronic chr16:81535286(+) A-I      intronic chr16:81706234(+) A-I      intronic chr16:81729470(+) A-I      intronic chr16:81706852(+) A-I      intronic chr16:81537817(+) A-I      intronic chr16:81537174(+) A-I      intronic chr16:81707035(+) A-I      intronic chr16:81546594(+) A-I      intronic chr16:81676612(+) A-I      intronic chr16:81706388(+) A-I      intronic chr16:81594769(+) A-I      intronic chr16:81582371(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CMIP	chr16:81552348(+) A-I intron -    15342557 chr16:81552473(+) A-I intron -    15342557 chr16:81552535(+) A-I intron -    15342557 chr16:81552558(+) A-I intron -    15342557 chr16:81552797(+) A-I intron -    15342557 chr16:81537706(+) A-G intron -    22484847 chr16:81538083(+) A-G intron -    22484847 chr16:81582371(+) A-G intron -    22484847 chr16:81707010(+) A-G intron -    22484847 chr16:81707014(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CMIP	chr16:81478802-81478803(+) m6A 5'UTR       25456834 chr16:81478900-81478901(+) m6A CDS       24284625//25456834//24981863 chr16:81479004-81479005(+) m6A CDS       24284625//25456834//24981863 chr16:81479053-81479054(+) m6A CDS       25456834//24981863 chr16:81486207-81486208(+) Cm intron       - chr16:81488776-81488777(+) Cm intron       - chr16:81528997-81528998(+) m6A 5'UTR//intron       25456834 chr16:81532685-81532686(+) Tm intron       - chr16:81685879-81685880(+) m6A 5'UTR//CDS//exon       26404942 chr16:81685889-81685890(+) m6A 5'UTR//CDS//exon       26404942 chr16:81685956-81685957(+) m6A CDS       - chr16:81691386-81691387(+) m6A CDS       - chr16:81691410-81691411(+) m6A CDS       - chr16:81694510-81694511(+) m6A CDS       - chr16:81731059-81731060(+) m6A exon//intron       24981863 chr16:81735318-81735319(+) Cm CDS       - chr16:81743615-81743616(+) m6A 3'UTR       25456834//24981863//26404942 chr16:81743638-81743639(+) m6A 3'UTR       25456834//24981863//26404942 chr16:81743706-81743707(+) m6A 3'UTR       24981863//26404942 chr16:81743831-81743832(+) m6A 3'UTR       24284625//24209618 chr16:81743851-81743852(+) m6A 3'UTR       24284625//24209618 chr16:81743859-81743860(+) m6A 3'UTR       24284625//24209618 chr16:81743955-81743956(+) m6A 3'UTR       24209618 chr16:81744494-81744495(+) m6A 3'UTR       - chr16:81744663-81744664(+) m6A 3'UTR       26404942 chr16:81744720-81744721(+) m6A 3'UTR       - chr16:81744758-81744759(+) m6A 3'UTR       - chr16:81744853-81744854(+) m6A 3'UTR       - chr16:81744909-81744910(+) m6A 3'UTR       27773535 chr16:81745241-81745242(+) m6A 3'UTR       24981863//27773535 chr16:81745246-81745247(+) m6A 3'UTR       24981863//27773535 chr16:81745348-81745349(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CMIP	Chromatin HCC cell line (HepG2)|K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm HCC cell line (HepG2)|K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: CMIP

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg