Detail Information

Basic Information:


  VIRBase ID:  

VHID00161297

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           CCNJL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p CCNJL
miRBase
Accession/Entrez ID		 MIMAT0010204 79616
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCNJL
chr5:159717379(-) A-I      intronic
chr5:159717369(-) A-I      intronic
chr5:159691174(-) A-I      intronic
chr5:159702201(-) A-I      intronic
chr5:159683060(-) A-I      intronic
chr5:159742468(-) A-I      NonSyn:Gln->Arg
chr5:159726040(-) A-I      intronic
chr5:159703956(-) A-I      intronic
chr5:159711148(-) A-I      intronic
chr5:159717411(-) A-I      intronic
chr5:159682077(-) A-I      intronic
chr5:159691093(-) A-I      intronic
chr5:159712166(-) A-I      intronic
chr5:159735508(-) A-I      intronic
chr5:159728910(-) A-I      intronic
chr5:159722241(-) A-I      intronic
chr5:159712170(-) A-I      intronic
chr5:159702568(-) A-I      intronic
chr5:159702236(-) A-I      intronic
chr5:159702256(-) A-I      intronic
chr5:159711328(-) A-I      intronic
chr5:159702306(-) A-I      intronic
chr5:159717437(-) A-I      intronic
chr5:159708796(-) A-I      intronic
chr5:159708741(-) A-I      intronic
chr5:159717561(-) A-I      intronic
chr5:159708718(-) A-I      intronic
chr5:159731959(-) A-I      intronic
chr5:159683089(-) A-I      intronic
chr5:159717456(-) A-I      intronic
chr5:159702197(-) A-I      intronic
chr5:159717981(-) A-I      intronic
chr5:159733162(-) A-I      intronic
chr5:159682984(-) A-I      intronic
chr5:159730395(-) A-I      intronic
chr5:159711141(-) A-I      intronic
chr5:159703292(-) A-I      Syn:Gln->Gln
chr5:159742467(-) A-I      Syn:Gln->Gln
chr5:159742398(-) A-I      Syn:Leu->Leu
chr5:159703353(-) A-I      NonSyn:His->Arg

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCNJL
chr5:159678748-159678749(-) m6A 3'UTR//exon       24284625
chr5:159678881-159678882(-) m6A 3'UTR//exon       24284625//24981863
chr5:159678912-159678913(-) m6A 3'UTR//exon       24284625//24981863
chr5:159679009-159679010(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679082-159679083(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679099-159679100(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679120-159679121(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679205-159679206(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679434-159679435(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679446-159679447(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679490-159679491(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679553-159679554(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679604-159679605(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679620-159679621(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679632-159679633(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679683-159679684(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr5:159679817-159679818(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679824-159679825(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr5:159679953-159679954(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr5:159680022-159680023(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:159680061-159680062(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:159680067-159680068(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:159680072-159680073(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:159680099-159680100(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:159680222-159680223(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:159680238-159680239(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:159680331-159680332(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr5:159680372-159680373(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr5:159680616-159680617(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr5:159680637-159680638(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr5:159680650-159680651(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr5:159686529-159686530(-) m6A CDS//exon       24284625//27773535
chr5:159686570-159686571(-) m6A CDS//exon       24284625//27773535
chr5:159686603-159686604(-) m6A CDS//exon       24284625//27773535
chr5:159686636-159686637(-) m6A CDS//exon       24284625//27773535
chr5:159686702-159686703(-) m6A CDS//exon       24284625//27773535
chr5:159686729-159686730(-) m6A CDS//exon       24284625//27773535
chr5:159686756-159686757(-) m6A CDS//exon       24284625//27773535
chr5:159696491-159696492(-) m6A exon//intron       24284625
chr5:159696544-159696545(-) m6A exon//intron       24284625
chr5:159707608-159707609(-) m6A CDS//exon       24284625
chr5:159707680-159707681(-) m6A CDS//exon       24284625//27371828
chr5:159707742-159707743(-) m6A CDS//exon       24284625//27371828//27773536
chr5:159707796-159707797(-) m6A CDS//intron       24284625//27371828
chr5:159707805-159707806(-) m6A CDS//intron       24284625//27371828
chr5:159739547-159739548(-) m6A 5'UTR//intron       24209618//25456834//27773536
chr5:159742394-159742395(-) m6A exon       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CCNJL
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: CCNJL

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...