Detail Information

Basic Information:


  VIRBase ID:  

VHID00161289

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           CHID1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p CHID1
miRBase
Accession/Entrez ID		 MIMAT0010204 66005
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - GL008//SI-CLP//SICLP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHID1
chr11:872355(-) A-I      intronic
chr11:872353(-) A-I      intronic
chr11:872346(-) A-I      intronic
chr11:872337(-) A-I      intronic
chr11:872336(-) A-I      intronic
chr11:882203(-) A-I      intronic
chr11:879195(-) A-I      intronic
chr11:878251(-) A-I      intronic
chr11:874669(-) A-I      intronic
chr11:874652(-) A-I      intronic
chr11:874643(-) A-I      intronic
chr11:874626(-) A-I      intronic
chr11:874616(-) A-I      intronic
chr11:877368(-) A-I      intronic
chr11:878950(-) A-I      intronic
chr11:906884(-) A-I      intronic
chr11:872334(-) A-I      intronic
chr11:878501(-) A-I      intronic
chr11:874381(-) A-I      intronic
chr11:878332(-) A-I      intronic
chr11:878266(-) A-I      intronic
chr11:878259(-) A-I      intronic
chr11:878257(-) A-I      intronic
chr11:877376(-) A-I      intronic
chr11:887199(-) A-I      intronic
chr11:878331(-) A-I      intronic
chr11:877372(-) A-I      intronic
chr11:872225(-) A-I      intronic
chr11:874672(-) A-I      intronic
chr11:879017(-) A-I      intronic
chr11:874706(-) A-I      intronic
chr11:872352(-) A-I      intronic
chr11:872438(-) A-I      intronic
chr11:879199(-) A-I      intronic
chr11:874315(-) A-I      intronic
chr11:878477(-) A-I      intronic
chr11:874245(-) A-I      intronic
chr11:887301(-) A-I      intronic
chr11:872399(-) A-I      intronic
chr11:871115(-) A-I      intronic
chr11:874380(-) A-I      intronic
chr11:879334(-) A-I      intronic
chr11:874673(-) A-I      intronic
chr11:874552(-) A-I      intronic
chr11:878958(-) A-I      intronic
chr11:871076(-) A-I      intronic
chr11:887133(-) A-I      intronic
chr11:886351(-) A-I      intronic
chr11:879191(-) A-I      intronic
chr11:871175(-) A-I      intronic
chr11:872226(-) A-I      intronic
chr11:871233(-) A-I      intronic
chr11:871062(-) A-I      intronic
chr11:879068(-) A-I      intronic
chr11:871059(-) A-I      intronic
chr11:879030(-) A-I      intronic
chr11:868471(-) A-I      3'UTR
chr11:868487(-) A-I      3'UTR
chr11:868412(-) A-I      3'UTR
chr11:868365(-) A-I      3'UTR
chr11:868406(-) A-I      3'UTR
chr11:877492(-) A-I      intronic
chr11:874205(-) A-I      intronic
chr11:878767(-) A-I      intronic
chr11:886359(-) A-I      intronic
chr11:874693(-) A-I      intronic
chr11:872403(-) A-I      intronic
chr11:878248(-) A-I      intronic
chr11:886203(-) A-I      intronic
chr11:874688(-) A-I      intronic
chr11:906051(-) A-I      intronic
chr11:872359(-) A-I      intronic
chr11:887300(-) A-I      intronic
chr11:878188(-) A-I      intronic
chr11:877496(-) A-I      intronic
chr11:874217(-) A-I      intronic
chr11:891218(-) A-I      intronic
chr11:885795(-) A-I      intronic
chr11:886402(-) A-I      intronic
chr11:879024(-) A-I      intronic
chr11:874487(-) A-I      intronic
chr11:879155(-) A-I      intronic
chr11:874579(-) A-I      intronic
chr11:871051(-) A-I      intronic
chr11:874619(-) A-I      intronic
chr11:874484(-) A-I      intronic
chr11:872430(-) A-I      intronic
chr11:885819(-) A-I      intronic
chr11:906443(-) A-I      intronic
chr11:877525(-) A-I      intronic
chr11:878345(-) A-I      intronic
chr11:874411(-) A-I      intronic
chr11:878169(-) A-I      intronic
chr11:874013(-) A-I      intronic
chr11:879294(-) A-I      intronic
chr11:878242(-) A-I      intronic
chr11:878985(-) A-I      intronic
chr11:882177(-) A-I      intronic
chr11:874492(-) A-I      intronic
chr11:871099(-) A-I      intronic
chr11:878804(-) A-I      intronic
chr11:874523(-) A-I      intronic
chr11:906161(-) A-I      intronic
chr11:872254(-) A-I      intronic
chr11:874387(-) A-I      intronic
chr11:906377(-) A-I      intronic
chr11:879023(-) A-I      intronic
chr11:871263(-) A-I      intronic
chr11:887278(-) A-I      intronic
chr11:874683(-) A-I      intronic
chr11:878314(-) A-I      intronic
chr11:878778(-) A-I      intronic
chr11:872236(-) A-I      intronic
chr11:874624(-) A-I      intronic
chr11:872376(-) A-I      intronic
chr11:874227(-) A-I      intronic
chr11:878787(-) A-I      intronic
chr11:878362(-) A-I      intronic
chr11:878555(-) A-I      intronic
chr11:879218(-) A-I      intronic
chr11:871170(-) A-I      intronic
chr11:872429(-) A-I      intronic
chr11:887127(-) A-I      intronic
chr11:872295(-) A-I      intronic
chr11:878830(-) A-I      intronic
chr11:878550(-) A-I      intronic
chr11:872455(-) A-I      intronic
chr11:872377(-) A-I      intronic
chr11:871264(-) A-I      intronic
chr11:879119(-) A-I      intronic
chr11:885837(-) A-I      intronic
chr11:874623(-) A-I      intronic
chr11:871155(-) A-I      intronic
chr11:878524(-) A-I      intronic
chr11:872423(-) A-I      intronic
chr11:877497(-) A-I      intronic
chr11:872250(-) A-I      intronic
chr11:891362(-) A-I      intronic
chr11:885838(-) A-I      intronic
chr11:886288(-) A-I      intronic
chr11:871058(-) A-I      intronic
chr11:871129(-) A-I      intronic
chr11:878327(-) A-I      intronic
chr11:885984(-) A-I      intronic
chr11:879196(-) A-I      intronic
chr11:879185(-) A-I      intronic
chr11:878923(-) A-I      intronic
chr11:878506(-) A-I      intronic
chr11:874593(-) A-I      intronic
chr11:871286(-) A-I      intronic
chr11:906442(-) A-I      intronic
chr11:871172(-) A-I      intronic
chr11:878943(-) A-I      intronic
chr11:878791(-) A-I      intronic
chr11:872351(-) A-I      intronic
chr11:874502(-) A-I      intronic
chr11:868397(-) A-I      3'UTR
chr11:868488(-) A-I      3'UTR
chr11:868472(-) A-I      3'UTR
chr11:868361(-) A-I      3'UTR
chr11:868401(-) A-I      3'UTR
chr11:868405(-) A-I      3'UTR
chr11:868470(-) A-I      3'UTR
chr11:868414(-) A-I      3'UTR
chr11:868404(-) A-I      3'UTR
chr11:868413(-) A-I      3'UTR
chr11:868410(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CHID1
chr11:868361(-) A-I exon 3'UTR    21960545   //22327324
chr11:879125(-) A-I intron -    22327324
chr11:868365(-) A-I exon 3'UTR    21960545
chr11:868401(-) A-I exon 3'UTR    21960545
chr11:868410(-) A-I exon 3'UTR    21960545
chr11:868410(-) A-G exon 3'UTR    21725310   //22484847
chr11:868361(-) A-G exon 3'UTR    22484847
chr11:868401(-) A-G exon 3'UTR    22484847
chr11:885960(-) T-C intron -    22484847
chr11:885975(-) G-A intron -    22484847
chr11:887300(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHID1
chr11:868394-868395(-) m6A 3'UTR       24981863//27773535
chr11:868433-868434(-) m6A 3'UTR       24981863//27773535
chr11:868639-868640(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr11:868717-868718(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr11:868783-868784(-) m6A 3'UTR//intron       24284625//24209618//27773535
chr11:868857-868858(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr11:868948-868949(-) m6A 3'UTR//intron       24284625//24209618//27773535//27773536
chr11:869100-869101(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr11:869132-869133(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869151-869152(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869186-869187(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869238-869239(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869249-869250(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869453-869454(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869489-869490(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869499-869500(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:869569-869570(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr11:869663-869664(-) m6A 3'UTR//intron       24284625//24209618
chr11:869879-869880(-) m6A CDS//exon       24981863//27773535
chr11:870454-870455(-) m6A 3'UTR//CDS//exon       -
chr11:870478-870479(-) m6A 3'UTR//CDS//exon       -
chr11:870488-870489(-) m6A CDS//exon       -
chr11:883249-883250(-) m6A CDS//exon       -
chr11:899363-899364(-) m6A 3'UTR//CDS//exon//intron       27773536
chr11:900023-900024(-) m6A 3'UTR//CDS//exon//intron       22575960
chr11:900055-900056(-) m6A 3'UTR//CDS//exon//intron       22575960
chr11:900083-900084(-) m6A 3'UTR//CDS//exon//intron       22575960
chr11:900088-900089(-) m6A 3'UTR//CDS//exon//intron       22575960
chr11:902202-902203(-) m6A 3'UTR//CDS//exon//intron       27371828//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHID1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: CHID1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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