Detail Information

Basic Information:


  VIRBase ID:  

VHID00161268

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           KIAA1549:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p KIAA1549
miRBase
Accession/Entrez ID		 MIMAT0010204 57670
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - RP86

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KIAA1549
chr7:138587709(-) A-I      intronic
chr7:138587704(-) A-I      intronic
chr7:138587700(-) A-I      intronic
chr7:138587696(-) A-I      intronic
chr7:138587695(-) A-I      intronic
chr7:138587692(-) A-I      intronic
chr7:138587673(-) A-I      intronic
chr7:138587658(-) A-I      intronic
chr7:138660998(-) A-I      intronic
chr7:138587711(-) A-I      intronic
chr7:138595314(-) A-I      intronic
chr7:138542939(-) A-I      intronic
chr7:138557448(-) A-I      intronic
chr7:138571724(-) A-I      intronic
chr7:138612669(-) A-I      intronic
chr7:138633576(-) A-I      intronic
chr7:138517143(-) A-I      3'UTR
chr7:138519175(-) A-I      3'UTR
chr7:138519167(-) A-I      3'UTR
chr7:138517147(-) A-I      3'UTR
chr7:138516937(-) A-I      3'UTR
chr7:138516956(-) A-I      3'UTR
chr7:138517142(-) A-I      3'UTR
chr7:138546581(-) A-I      intronic
chr7:138630589(-) A-I      intronic
chr7:138556847(-) A-I      intronic
chr7:138587551(-) A-I      intronic
chr7:138612130(-) A-I      intronic
chr7:138642496(-) A-I      intronic
chr7:138557479(-) A-I      intronic
chr7:138611303(-) A-I      intronic
chr7:138567806(-) A-I      intronic
chr7:138611249(-) A-I      intronic
chr7:138560596(-) A-I      intronic
chr7:138560751(-) A-I      intronic
chr7:138560665(-) A-I      intronic
chr7:138645345(-) A-I      intronic
chr7:138551776(-) A-I      intronic
chr7:138551625(-) A-I      intronic
chr7:138571721(-) A-I      intronic
chr7:138556825(-) A-I      intronic
chr7:138567794(-) A-I      intronic
chr7:138642362(-) A-I      intronic
chr7:138662613(-) A-I      intronic
chr7:138557644(-) A-I      intronic
chr7:138559703(-) A-I      intronic
chr7:138560747(-) A-I      intronic
chr7:138662583(-) A-I      intronic
chr7:138562238(-) A-I      intronic
chr7:138662615(-) A-I      intronic
chr7:138611295(-) A-I      intronic
chr7:138551799(-) A-I      intronic
chr7:138586177(-) A-I      intronic
chr7:138523647(-) A-I      intronic
chr7:138542983(-) A-I      intronic
chr7:138523653(-) A-I      intronic
chr7:138543115(-) A-I      intronic
chr7:138630564(-) A-I      intronic
chr7:138551805(-) A-I      intronic
chr7:138594611(-) A-I      intronic
chr7:138660895(-) A-I      intronic
chr7:138586174(-) A-I      intronic
chr7:138551781(-) A-I      intronic
chr7:138630557(-) A-I      intronic
chr7:138546495(-) A-I      intronic
chr7:138595523(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KIAA1549
chr7:138612849(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KIAA1549
chr7:138517407-138517408(-) m6A 3'UTR       27773535
chr7:138517414-138517415(-) m6A 3'UTR       27773535
chr7:138517462-138517463(-) m6A 3'UTR       27773535
chr7:138518684-138518685(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr7:138518713-138518714(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr7:138518896-138518897(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr7:138518931-138518932(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:138519640-138519641(-) m6A 3'UTR       27773535
chr7:138519646-138519647(-) m6A 3'UTR       27773535
chr7:138519669-138519670(-) m6A 3'UTR       27773535
chr7:138519711-138519712(-) m6A 3'UTR       27773535
chr7:138519766-138519767(-) m6A 3'UTR       27773535
chr7:138519825-138519826(-) m6A 3'UTR       24981863//22608085
chr7:138519916-138519917(-) m6A 3'UTR       24284625//24981863//22608085
chr7:138519956-138519957(-) m6A 3'UTR       24284625//24981863//22608085
chr7:138519967-138519968(-) m6A 3'UTR       24284625//24981863//22608085
chr7:138520376-138520377(-) m6A 3'UTR       24981863//22608085
chr7:138520608-138520609(-) m6A 3'UTR       24981863
chr7:138521986-138521987(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr7:138522066-138522067(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr7:138522101-138522102(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:138522136-138522137(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr7:138522175-138522176(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr7:138522218-138522219(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:138522253-138522254(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:138522272-138522273(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522296-138522297(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522316-138522317(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522325-138522326(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522378-138522379(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522384-138522385(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522389-138522390(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:138522449-138522450(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr7:138522599-138522600(-) m6A 3'UTR       24284625//25456834//24981863//27773536//22608085
chr7:138522663-138522664(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr7:138522680-138522681(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr7:138522753-138522754(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:138522797-138522798(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:138522813-138522814(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr7:138522847-138522848(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr7:138522890-138522891(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828
chr7:138537004-138537005(-) m6A CDS       24284625
chr7:138545969-138545970(-) m6A CDS       24284625
chr7:138546075-138546076(-) m6A CDS       24284625//24981863
chr7:138546154-138546155(-) m6A CDS       24284625//27773535
chr7:138546171-138546172(-) m6A CDS       24284625//27773535
chr7:138552781-138552782(-) m6A CDS       24284625
chr7:138552799-138552800(-) m6A CDS       24284625
chr7:138552837-138552838(-) m6A CDS       24284625
chr7:138566225-138566226(-) m6A CDS       -
chr7:138591752-138591753(-) Tm CDS       -
chr7:138601738-138601739(-) m6A CDS       24284625//27773535
chr7:138602120-138602121(-) m6A CDS       24284625//24981863//27773535
chr7:138602257-138602258(-) m6A CDS       24284625//27773535
chr7:138602366-138602367(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr7:138602472-138602473(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr7:138602526-138602527(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr7:138602617-138602618(-) m6A CDS       24284625//27773535
chr7:138602641-138602642(-) m6A CDS       24284625//27773535
chr7:138602647-138602648(-) m6A CDS       24284625//27773535
chr7:138602735-138602736(-) m6A CDS       24284625//27773535
chr7:138602907-138602908(-) m6A CDS       24284625//24981863//27773535
chr7:138602962-138602963(-) m6A CDS       24284625//24981863
chr7:138603023-138603024(-) m6A CDS       24284625//24981863//27371828//22608085
chr7:138603123-138603124(-) m6A CDS       24284625//24981863//27371828//22575960//22608085
chr7:138603160-138603161(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr7:138603203-138603204(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:138603302-138603303(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr7:138603350-138603351(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr7:138603365-138603366(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr7:138603412-138603413(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr7:138603536-138603537(-) m6A CDS       24284625//24981863//22575960//22608085
chr7:138603578-138603579(-) m6A CDS       24284625//24981863//22608085
chr7:138603730-138603731(-) m6A CDS       24284625//24981863//22608085
chr7:138603798-138603799(-) m6A CDS       24284625//24981863//27773535//22608085
chr7:138603872-138603873(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr7:138603990-138603991(-) m6A CDS       24284625//24981863//27773535//22608085
chr7:138604082-138604083(-) m6A CDS       24284625//24981863
chr7:138604167-138604168(-) m6A CDS       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate KIAA1549
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: KIAA1549

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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