Basic Information:

  VIRBase ID:  

VHID00161127

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          EXOSC2:  NR_104230     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	EXOSC2
miRBase Accession/Entrez ID	MIMAT0010204	23404
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hRrp4p//p7//RRP4//Rrp4p//SHRF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EXOSC2	chr9:133575603(+) A-I      intronic chr9:133575606(+) A-I      intronic chr9:133575626(+) A-I      intronic chr9:133575640(+) A-I      intronic chr9:133575802(+) A-I      intronic chr9:133575827(+) A-I      intronic chr9:133575892(+) A-I      intronic chr9:133575210(+) A-I      intronic chr9:133575319(+) A-I      intronic chr9:133575351(+) A-I      intronic chr9:133576007(+) A-I      intronic chr9:133575364(+) A-I      intronic chr9:133575359(+) A-I      intronic chr9:133575314(+) A-I      intronic chr9:133575301(+) A-I      intronic chr9:133575290(+) A-I      intronic chr9:133575188(+) A-I      intronic chr9:133575193(+) A-I      intronic chr9:133575205(+) A-I      intronic chr9:133575263(+) A-I      intronic chr9:133575265(+) A-I      intronic chr9:133575376(+) A-I      intronic chr9:133575513(+) A-I      intronic chr9:133575572(+) A-I      intronic chr9:133575590(+) A-I      intronic chr9:133579877(+) A-I      3'UTR chr9:133580445(+) A-I      3'UTR chr9:133579899(+) A-I      3'UTR chr9:133580431(+) A-I      3'UTR chr9:133579653(+) A-I      3'UTR chr9:133579918(+) A-I      3'UTR chr9:133579707(+) A-I      3'UTR chr9:133579807(+) A-I      3'UTR chr9:133579919(+) A-I      3'UTR chr9:133579852(+) A-I      3'UTR chr9:133580442(+) A-I      3'UTR chr9:133580411(+) A-I      3'UTR chr9:133579859(+) A-I      3'UTR chr9:133579708(+) A-I      3'UTR chr9:133579733(+) A-I      3'UTR chr9:133579739(+) A-I      3'UTR chr9:133579759(+) A-I      3'UTR chr9:133579764(+) A-I      3'UTR chr9:133579775(+) A-I      3'UTR chr9:133575886(+) A-I      intronic chr9:133575225(+) A-I      intronic chr9:133575535(+) A-I      intronic chr9:133575929(+) A-I      intronic chr9:133575536(+) A-I      intronic chr9:133575339(+) A-I      intronic chr9:133575487(+) A-I      intronic chr9:133575549(+) A-I      intronic chr9:133575765(+) A-I      intronic chr9:133575247(+) A-I      intronic chr9:133575456(+) A-I      intronic chr9:133575965(+) A-I      intronic chr9:133575587(+) A-I      intronic chr9:133575155(+) A-I      intronic chr9:133580353(+) A-I      3'UTR chr9:133579791(+) A-I      3'UTR chr9:133579765(+) A-I      3'UTR chr9:133580405(+) A-I      3'UTR chr9:133579684(+) A-I      3'UTR chr9:133580382(+) A-I      3'UTR chr9:133580446(+) A-I      3'UTR chr9:133579740(+) A-I      3'UTR chr9:133580425(+) A-I      3'UTR chr9:133579924(+) A-I      3'UTR chr9:133580400(+) A-I      3'UTR chr9:133579683(+) A-I      3'UTR chr9:133579731(+) A-I      3'UTR chr9:133579755(+) A-I      3'UTR chr9:133579830(+) A-I      3'UTR chr9:133580448(+) A-I      3'UTR chr9:133579659(+) A-I      3'UTR chr9:133579887(+) A-I      3'UTR chr9:133579639(+) A-I      3'UTR chr9:133579869(+) A-I      3'UTR chr9:133579757(+) A-I      3'UTR chr9:133579661(+) A-I      3'UTR chr9:133579674(+) A-I      3'UTR chr9:133580449(+) A-I      3'UTR chr9:133580430(+) A-I      3'UTR chr9:133579846(+) A-I      3'UTR chr9:133579897(+) A-I      3'UTR chr9:133579768(+) A-I      3'UTR chr9:133580354(+) A-I      3'UTR chr9:133580406(+) A-I      3'UTR chr9:133579662(+) A-I      3'UTR chr9:133579839(+) A-I      3'UTR chr9:133575349(+) A-I      intronic chr9:133575156(+) A-I      intronic chr9:133575527(+) A-I      intronic chr9:133575333(+) A-I      intronic chr9:133575888(+) A-I      intronic chr9:133575279(+) A-I      intronic chr9:133575187(+) A-I      intronic chr9:133575826(+) A-I      intronic chr9:133575771(+) A-I      intronic chr9:133575133(+) A-I      intronic chr9:133575680(+) A-I      intronic chr9:133575608(+) A-I      intronic chr9:133575231(+) A-I      intronic chr9:133575273(+) A-I      intronic chr9:133576020(+) A-I      intronic chr9:133575998(+) A-I      intronic chr9:133575493(+) A-I      intronic chr9:133575876(+) A-I      intronic chr9:133575139(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	EXOSC2	chr9:133575487(+) A-I intron -    22327324 chr9:133575535(+) A-I intron -    22327324 chr9:133575247(+) A-I intron -    21960545 chr9:133575333(+) A-I intron -    21960545 chr9:133580370(+) A-I intron -    21960545 chr9:133580447(+) A-I intron -    21960545 chr9:133580451(+) A-I intron -    21960545 chr9:133579775(+) A-I intron -    21960545 chr9:133580397(+) A-G intron -    21725310   //22484847 chr9:133575133(+) A-G intron -    22484847 chr9:133575134(+) A-G intron -    22484847 chr9:133575155(+) A-G intron -    22484847 chr9:133575207(+) A-G intron -    22484847 chr9:133575287(+) A-G intron -    22484847 chr9:133575333(+) A-G intron -    22484847 chr9:133575338(+) A-G intron -    22484847 chr9:133575339(+) A-G intron -    22484847 chr9:133575487(+) A-G intron -    22484847 chr9:133575535(+) A-G intron -    22484847 chr9:133575821(+) A-G intron -    22484847 chr9:133575826(+) A-G intron -    22484847 chr9:133575864(+) A-G intron -    22484847 chr9:133575876(+) A-G intron -    22484847 chr9:133575886(+) A-G intron -    22484847 chr9:133575998(+) A-G intron -    22484847 chr9:133576008(+) A-G intron -    22484847 chr9:133579639(+) A-G intron -    22484847 chr9:133579674(+) A-G intron -    22484847 chr9:133579683(+) A-G intron -    22484847 chr9:133579684(+) A-G intron -    22484847 chr9:133579734(+) A-G intron -    22484847 chr9:133579756(+) A-G intron -    22484847 chr9:133579797(+) A-G intron -    22484847 chr9:133579833(+) A-G intron -    22484847 chr9:133579838(+) A-G intron -    22484847 chr9:133579839(+) A-G intron -    22484847 chr9:133579887(+) A-G intron -    22484847 chr9:133580370(+) A-G intron -    22484847 chr9:133580406(+) A-G intron -    22484847 chr9:133580425(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EXOSC2	chr9:133569228-133569229(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr9:133569249-133569250(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr9:133569284-133569285(+) m6A CDS//exon       24284625//24209618//24981863//26404942 chr9:133570946-133570947(+) m6A CDS//exon       24981863 chr9:133570975-133570976(+) m6A CDS//exon       - chr9:133570986-133570987(+) m6A exon//intron       - chr9:133572988-133572989(+) m6A CDS//exon//intron       - chr9:133573575-133573576(+) m6A CDS//exon//intron       22575960 chr9:133573618-133573619(+) m6A CDS//exon//intron       24284625//22575960 chr9:133574770-133574771(+) m6A CDS//exon       24284625 chr9:133574826-133574827(+) m6A exon//intron       24284625 chr9:133576529-133576530(+) m6A exon//intron       24284625 chr9:133576557-133576558(+) m6A exon//intron       24284625 chr9:133576848-133576849(+) m6A exon//intron       22575960//22608085 chr9:133576911-133576912(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133576917-133576918(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133576945-133576946(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133576979-133576980(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133577021-133577022(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133577043-133577044(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133577063-133577064(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr9:133577068-133577069(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr9:133577173-133577174(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:133577278-133577279(+) m6A exon//intron       24284625//24209618//24981863//22608085 chr9:133577412-133577413(+) m6A exon//intron       24981863 chr9:133577421-133577422(+) m6A exon//intron       24981863 chr9:133578565-133578566(+) Cm CDS//exon       - chr9:133579087-133579088(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:133579128-133579129(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579148-133579149(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579183-133579184(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579190-133579191(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579207-133579208(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579244-133579245(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:133579347-133579348(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:133579526-133579527(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:133579717-133579718(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr9:133579740-133579741(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr9:133579838-133579839(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr9:133579906-133579907(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr9:133579930-133579931(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr9:133580107-133580108(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr9:133580138-133580139(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EXOSC2	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: EXOSC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg