Basic Information:

  VIRBase ID:  

VHID00161062

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          PNMA2:  NM_007257     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	PNMA2
miRBase Accession/Entrez ID	MIMAT0010204	10687
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MA2//MM2//RGAG2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PNMA2	chr8:26367998(-) A-I      intronic chr8:26368007(-) A-I      intronic chr8:26369168(-) A-I      ncRNA chr8:26363250(-) A-I      3'UTR chr8:26363369(-) A-I      3'UTR chr8:26363504(-) A-I      3'UTR chr8:26364740(-) A-I      3'UTR chr8:26364773(-) A-I      3'UTR chr8:26363379(-) A-I      3'UTR chr8:26363375(-) A-I      3'UTR chr8:26363419(-) A-I      3'UTR chr8:26363338(-) A-I      3'UTR chr8:26364715(-) A-I      3'UTR chr8:26364726(-) A-I      3'UTR chr8:26363363(-) A-I      3'UTR chr8:26368412(-) A-I      intronic chr8:26369243(-) A-I      ncRNA chr8:26369087(-) A-I      intronic chr8:26368245(-) A-I      intronic chr8:26369256(-) A-I      ncRNA chr8:26369181(-) A-I      ncRNA chr8:26369251(-) A-I      ncRNA chr8:26368022(-) A-I      intronic chr8:26368637(-) A-I      intronic chr8:26364942(-) A-I      3'UTR chr8:26363407(-) A-I      3'UTR chr8:26363454(-) A-I      3'UTR chr8:26363487(-) A-I      3'UTR chr8:26364734(-) A-I      3'UTR chr8:26363262(-) A-I      3'UTR chr8:26364924(-) A-I      3'UTR chr8:26363385(-) A-I      3'UTR chr8:26363430(-) A-I      3'UTR chr8:26364876(-) A-I      3'UTR chr8:26369025(-) A-I      intronic chr8:26367997(-) A-I      intronic chr8:26368086(-) A-I      intronic chr8:26369182(-) A-I      ncRNA chr8:26368646(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PNMA2	chr8:26362739-26362740(-) m6A 3'UTR       24981863 chr8:26362783-26362784(-) m6A 3'UTR       24981863 chr8:26364997-26364998(-) Y 3'UTR       26075521 chr8:26365092-26365093(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr8:26365103-26365104(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr8:26365136-26365137(-) m6A 3'UTR       24209618//24981863//26404942//27773535//22608085 chr8:26365157-26365158(-) m6A 3'UTR       24209618//24981863//26404942//27773535//27371828//22608085 chr8:26365173-26365174(-) m6A 3'UTR       24209618//24981863//26404942//27773535//27371828//22608085 chr8:26365399-26365400(-) m6A CDS       24209618 chr8:26365451-26365452(-) m6A CDS       24209618 chr8:26365502-26365503(-) m6A CDS       24209618//27773535 chr8:26365526-26365527(-) m6A CDS       24209618//27773535 chr8:26365600-26365601(-) m6A CDS       24981863//27773535//27773536 chr8:26365624-26365625(-) m6A CDS       24981863//27773535//27773536 chr8:26365713-26365714(-) m6A CDS       27773536 chr8:26365951-26365952(-) m6A CDS       27773535//27773536 chr8:26365975-26365976(-) m6A CDS       24209618//27773535//27371828//27773536 chr8:26365988-26365989(-) m6A CDS       24209618//27773535//27371828//27773536 chr8:26366121-26366122(-) m6A CDS       24209618//24981863//27773535//27371828//22608085 chr8:26366147-26366148(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr8:26366185-26366186(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr8:26366248-26366249(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr8:26366273-26366274(-) m6A 5'UTR       24209618//24981863//26404942//27773535//27371828//22608085 chr8:26366396-26366397(-) m6A 5'UTR//exon       24209618//24981863//27773535//27371828//22608085 chr8:26366430-26366431(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr8:26366484-26366485(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr8:26366522-26366523(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27773535//27371828//27773536//22608085 chr8:26366554-26366555(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27371828//27773536//22608085 chr8:26366659-26366660(-) m6A 5'UTR//exon       24209618//24981863//27371828//27773536//22608085 chr8:26366668-26366669(-) m6A 5'UTR//exon       24981863//27371828//27773536 chr8:26366773-26366774(-) m6A exon//intron       27371828 chr8:26366778-26366779(-) m6A exon//intron       27371828 chr8:26367160-26367161(-) m6A 5'UTR//exon       24981863//27371828 chr8:26369170-26369171(-) m6A exon//intron       24981863//27371828 chr8:26371385-26371386(-) m6A 5'UTR//exon       24209618//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PNMA2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: PNMA2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg