Basic Information:

  VIRBase ID:  

VHID00161056

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          NXF1:  NM_006362     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	NXF1
miRBase Accession/Entrez ID	MIMAT0010204	10482
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MEX67//TAP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NXF1	chr11:62570669(-) A-I      intronic chr11:62570066(-) A-I      intronic chr11:62570048(-) A-I      intronic chr11:62570200(-) A-I      intronic chr11:62570129(-) A-I      intronic chr11:62570086(-) A-I      intronic chr11:62561054(-) A-I      intronic chr11:62561611(-) A-I      intronic chr11:62561601(-) A-I      intronic chr11:62570672(-) A-I      intronic chr11:62562765(-) A-I      intronic chr11:62560689(-) A-I      intronic chr11:62570679(-) A-I      intronic chr11:62570181(-) A-I      intronic chr11:62570111(-) A-I      intronic chr11:62570113(-) A-I      intronic chr11:62570665(-) A-I      intronic chr11:62570085(-) A-I      intronic chr11:62570061(-) A-I      intronic chr11:62560828(-) A-I      intronic chr11:62561630(-) A-I      intronic chr11:62562777(-) A-I      intronic chr11:62564534(-) A-I      intronic chr11:62560715(-) A-I      intronic chr11:62560733(-) A-I      intronic chr11:62561113(-) A-I      intronic chr11:62560939(-) A-I      intronic chr11:62560754(-) A-I      intronic chr11:62560980(-) A-I      intronic chr11:62560940(-) A-I      intronic chr11:62560724(-) A-I      intronic chr11:62570606(-) A-I      intronic chr11:62560990(-) A-I      intronic chr11:62561544(-) A-I      intronic chr11:62570106(-) A-I      intronic chr11:62570731(-) A-I      intronic chr11:62560830(-) A-I      intronic chr11:62570092(-) A-I      intronic chr11:62561099(-) A-I      intronic chr11:62561111(-) A-I      intronic chr11:62561001(-) A-I      intronic chr11:62567595(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NXF1	chr11:62561104(-) A-I intron -    22327324 chr11:62560990(-) A-G intron -    22484847 chr11:62561104(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NXF1	chr11:62559677-62559678(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:62559707-62559708(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:62559719-62559720(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:62559730-62559731(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:62559784-62559785(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:62561862-62561863(-) Gm 3'UTR//CDS//exon       - chr11:62563553-62563554(-) m6A 3'UTR//CDS//exon       27773535 chr11:62563584-62563585(-) m6A 3'UTR//CDS//exon       27773535 chr11:62563763-62563764(-) m6A 3'UTR//CDS//exon       27773535 chr11:62563940-62563941(-) m6A 3'UTR//CDS//exon//intron       27773535 chr11:62564012-62564013(-) m6A 3'UTR//CDS//exon//intron       27773535 chr11:62564419-62564420(-) m6A exon//intron       27773535 chr11:62564687-62564688(-) m6A 3'UTR//CDS//exon       27773535 chr11:62564694-62564695(-) m6A 3'UTR//CDS//exon       27773535 chr11:62566251-62566252(-) m6A 3'UTR//intron       27371828 chr11:62566433-62566434(-) m6A 3'UTR//exon//intron       24981863 chr11:62566443-62566444(-) m6A 3'UTR//exon//intron       24981863 chr11:62566756-62566757(-) m6A 3'UTR//intron       27773535 chr11:62566818-62566819(-) m6A 3'UTR//intron       27773535//27371828 chr11:62566824-62566825(-) m6A 3'UTR//intron       27773535//27371828 chr11:62566837-62566838(-) m6A 3'UTR//intron       27371828 chr11:62566909-62566910(-) m6A 3'UTR//intron       27773535//27371828 chr11:62566941-62566942(-) m6A 3'UTR//intron       27773535//27371828 chr11:62566969-62566970(-) m6A 3'UTR//intron       24981863//27773535//27371828 chr11:62567003-62567004(-) m6A 3'UTR//intron       24981863//27773535//27371828 chr11:62567013-62567014(-) m6A 3'UTR//intron       24981863//27773535//27371828 chr11:62567126-62567127(-) m6A 3'UTR//intron       27371828 chr11:62567133-62567134(-) m6A 3'UTR//intron       27371828 chr11:62569228-62569229(-) m6A CDS//intron       27773535 chr11:62569240-62569241(-) m6A CDS//intron       27773535 chr11:62569420-62569421(-) m6A CDS//intron       27773535 chr11:62569432-62569433(-) Tm CDS//intron       - chr11:62570906-62570907(-) m6A 3'UTR//CDS//intron       27773535 chr11:62570916-62570917(-) m6A 3'UTR//CDS//intron       27773535 chr11:62570963-62570964(-) m6A 3'UTR//CDS//intron       24981863 chr11:62571368-62571369(-) m6A 5'UTR//CDS//exon//intron       24209618//27371828 chr11:62571448-62571449(-) m6A 5'UTR//CDS//exon//intron       24209618//24981863//27371828 chr11:62571493-62571494(-) m6A 5'UTR//intron       24209618//24981863//27371828 chr11:62571498-62571499(-) m6A 5'UTR//intron       24209618//24981863//27371828 chr11:62572653-62572654(-) m6A 5'UTR//intron       24981863 chr11:62572913-62572914(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NXF1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: NXF1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg