Detail Information

Basic Information:


  VIRBase ID:  

VHID00161025

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           SERTAD2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p SERTAD2
miRBase
Accession/Entrez ID		 MIMAT0010204 9792
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - Sei-2//TRIP-Br2//TRIPBR2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SERTAD2
chr2:64935231(-) A-I      intronic
chr2:64935245(-) A-I      intronic
chr2:64922107(-) A-I      intronic
chr2:64935217(-) A-I      intronic
chr2:64975106(-) A-I      intronic
chr2:64963580(-) A-I      intronic
chr2:64935214(-) A-I      intronic
chr2:64935232(-) A-I      intronic
chr2:64922127(-) A-I      intronic
chr2:64922133(-) A-I      intronic
chr2:64922132(-) A-I      intronic
chr2:64934706(-) A-I      intronic
chr2:64975105(-) A-I      intronic
chr2:64935228(-) A-I      intronic
chr2:64922102(-) A-I      intronic
chr2:64922103(-) A-I      intronic
chr2:64922095(-) A-I      intronic
chr2:64935207(-) A-I      intronic
chr2:64934707(-) A-I      intronic
chr2:64966235(-) A-I      intronic
chr2:64947632(-) A-I      intronic
chr2:64947638(-) A-I      intronic
chr2:64947674(-) A-I      intronic
chr2:64948824(-) A-I      intronic
chr2:64948928(-) A-I      intronic
chr2:64947616(-) A-I      intronic
chr2:64967695(-) A-I      intronic
chr2:64944771(-) A-I      intronic
chr2:64944867(-) A-I      intronic
chr2:64967691(-) A-I      intronic
chr2:64967700(-) A-I      intronic
chr2:64967701(-) A-I      intronic
chr2:64967734(-) A-I      intronic
chr2:64952342(-) A-I      intronic
chr2:64967248(-) A-I      intronic
chr2:64975125(-) A-I      intronic
chr2:64975107(-) A-I      intronic
chr2:64975018(-) A-I      intronic
chr2:64974885(-) A-I      intronic
chr2:64974748(-) A-I      intronic
chr2:64968417(-) A-I      intronic
chr2:64967783(-) A-I      intronic
chr2:64967758(-) A-I      intronic
chr2:64967741(-) A-I      intronic
chr2:64967742(-) A-I      intronic
chr2:64964002(-) A-I      intronic
chr2:64955858(-) A-I      intronic
chr2:64967743(-) A-I      intronic
chr2:64955854(-) A-I      intronic
chr2:64963984(-) A-I      intronic
chr2:64955776(-) A-I      intronic
chr2:64953076(-) A-I      intronic
chr2:64953032(-) A-I      intronic
chr2:64953028(-) A-I      intronic
chr2:64953003(-) A-I      intronic
chr2:64952993(-) A-I      intronic
chr2:64952547(-) A-I      intronic
chr2:64952469(-) A-I      intronic
chr2:64952463(-) A-I      intronic
chr2:64952428(-) A-I      intronic
chr2:64963576(-) A-I      intronic
chr2:64963567(-) A-I      intronic
chr2:64963194(-) A-I      intronic
chr2:64963171(-) A-I      intronic
chr2:64963169(-) A-I      intronic
chr2:64963103(-) A-I      intronic
chr2:64956317(-) A-I      intronic
chr2:64956313(-) A-I      intronic
chr2:64956272(-) A-I      intronic
chr2:64956212(-) A-I      intronic
chr2:64955944(-) A-I      intronic
chr2:64964006(-) A-I      intronic
chr2:64964029(-) A-I      intronic
chr2:64964041(-) A-I      intronic
chr2:64964086(-) A-I      intronic
chr2:64964091(-) A-I      intronic
chr2:64964126(-) A-I      intronic
chr2:64965965(-) A-I      intronic
chr2:64965981(-) A-I      intronic
chr2:64950845(-) A-I      intronic
chr2:64949011(-) A-I      intronic
chr2:64966012(-) A-I      intronic
chr2:64966096(-) A-I      intronic
chr2:64966106(-) A-I      intronic
chr2:64966142(-) A-I      intronic
chr2:64966171(-) A-I      intronic
chr2:64947597(-) A-I      intronic
chr2:64947579(-) A-I      intronic
chr2:64947567(-) A-I      intronic
chr2:64947557(-) A-I      intronic
chr2:64947500(-) A-I      intronic
chr2:64964015(-) A-I      intronic
chr2:64966172(-) A-I      intronic
chr2:64966179(-) A-I      intronic
chr2:64966217(-) A-I      intronic
chr2:64886159(-) A-I      intronic
chr2:64886185(-) A-I      intronic
chr2:64891847(-) A-I      intronic
chr2:64891891(-) A-I      intronic
chr2:64891967(-) A-I      intronic
chr2:64897983(-) A-I      intronic
chr2:64898757(-) A-I      intronic
chr2:64898760(-) A-I      intronic
chr2:64898796(-) A-I      intronic
chr2:64899473(-) A-I      intronic
chr2:64899532(-) A-I      intronic
chr2:64899544(-) A-I      intronic
chr2:64899592(-) A-I      intronic
chr2:64899600(-) A-I      intronic
chr2:64899665(-) A-I      intronic
chr2:64908143(-) A-I      intronic
chr2:64914168(-) A-I      intronic
chr2:64914199(-) A-I      intronic
chr2:64914277(-) A-I      intronic
chr2:64914278(-) A-I      intronic
chr2:64936936(-) A-I      intronic
chr2:64936971(-) A-I      intronic
chr2:64936984(-) A-I      intronic
chr2:64937011(-) A-I      intronic
chr2:64937127(-) A-I      intronic
chr2:64940057(-) A-I      intronic
chr2:64940070(-) A-I      intronic
chr2:64940092(-) A-I      intronic
chr2:64940140(-) A-I      intronic
chr2:64940368(-) A-I      intronic
chr2:64940396(-) A-I      intronic
chr2:64940503(-) A-I      intronic
chr2:64941605(-) A-I      intronic
chr2:64941612(-) A-I      intronic
chr2:64941662(-) A-I      intronic
chr2:64941721(-) A-I      intronic
chr2:64941780(-) A-I      intronic
chr2:64941781(-) A-I      intronic
chr2:64942165(-) A-I      intronic
chr2:64942191(-) A-I      intronic
chr2:64944703(-) A-I      intronic
chr2:64944725(-) A-I      intronic
chr2:64944728(-) A-I      intronic
chr2:64975128(-) A-I      intronic
chr2:64964061(-) A-I      intronic
chr2:64963588(-) A-I      intronic
chr2:64940132(-) A-I      intronic
chr2:64963534(-) A-I      intronic
chr2:64898013(-) A-I      intronic
chr2:64968234(-) A-I      intronic
chr2:64974807(-) A-I      intronic
chr2:64941675(-) A-I      intronic
chr2:64940103(-) A-I      intronic
chr2:64963616(-) A-I      intronic
chr2:64963603(-) A-I      intronic
chr2:64947445(-) A-I      intronic
chr2:64948835(-) A-I      intronic
chr2:64968344(-) A-I      intronic
chr2:64975145(-) A-I      intronic
chr2:64968317(-) A-I      intronic
chr2:64974793(-) A-I      intronic
chr2:64967189(-) A-I      intronic
chr2:64947596(-) A-I      intronic
chr2:64948899(-) A-I      intronic
chr2:64956186(-) A-I      intronic
chr2:64948947(-) A-I      intronic
chr2:64940419(-) A-I      intronic
chr2:64941659(-) A-I      intronic
chr2:64974686(-) A-I      intronic
chr2:64967183(-) A-I      intronic
chr2:64941592(-) A-I      intronic
chr2:64967144(-) A-I      intronic
chr2:64964097(-) A-I      intronic
chr2:64967272(-) A-I      intronic
chr2:64974782(-) A-I      intronic
chr2:64975212(-) A-I      intronic
chr2:64963621(-) A-I      intronic
chr2:64939999(-) A-I      intronic
chr2:64950915(-) A-I      intronic
chr2:64963031(-) A-I      intronic
chr2:64969225(-) A-I      intronic
chr2:64974783(-) A-I      intronic
chr2:64974868(-) A-I      intronic
chr2:64963205(-) A-I      intronic
chr2:64967127(-) A-I      intronic
chr2:64967227(-) A-I      intronic
chr2:64940051(-) A-I      intronic
chr2:64963110(-) A-I      intronic
chr2:64956282(-) A-I      intronic
chr2:64938076(-) A-I      intronic
chr2:64956276(-) A-I      intronic
chr2:64967264(-) A-I      intronic
chr2:64963561(-) A-I      intronic
chr2:64975679(-) A-I      intronic
chr2:64940417(-) A-I      intronic
chr2:64899705(-) A-I      intronic
chr2:64950806(-) A-I      intronic
chr2:64937121(-) A-I      intronic
chr2:64898203(-) A-I      intronic
chr2:64974674(-) A-I      intronic
chr2:64940422(-) A-I      intronic
chr2:64940418(-) A-I      intronic
chr2:64963625(-) A-I      intronic
chr2:64898690(-) A-I      intronic
chr2:64974751(-) A-I      intronic
chr2:64975093(-) A-I      intronic
chr2:64898743(-) A-I      intronic
chr2:64975156(-) A-I      intronic
chr2:64892003(-) A-I      intronic
chr2:64968318(-) A-I      intronic
chr2:64939987(-) A-I      intronic
chr2:64964158(-) A-I      intronic
chr2:64952971(-) A-I      intronic
chr2:64968430(-) A-I      intronic
chr2:64898296(-) A-I      intronic
chr2:64891600(-) A-I      intronic
chr2:64931726(-) A-I      intronic
chr2:64939922(-) A-I      intronic
chr2:64940350(-) A-I      intronic
chr2:64940313(-) A-I      intronic
chr2:64948989(-) A-I      intronic
chr2:64963139(-) A-I      intronic
chr2:64940093(-) A-I      intronic
chr2:64975108(-) A-I      intronic
chr2:64967590(-) A-I      intronic
chr2:64892012(-) A-I      intronic
chr2:64919996(-) A-I      intronic
chr2:64939991(-) A-I      intronic
chr2:64941640(-) A-I      intronic
chr2:64947497(-) A-I      intronic
chr2:64956308(-) A-I      intronic
chr2:64938067(-) A-I      intronic
chr2:64898735(-) A-I      intronic
chr2:64899650(-) A-I      intronic
chr2:64948889(-) A-I      intronic
chr2:64975725(-) A-I      intronic
chr2:64909768(-) A-I      intronic
chr2:64967113(-) A-I      intronic
chr2:64974768(-) A-I      intronic
chr2:64968353(-) A-I      intronic
chr2:64898824(-) A-I      intronic
chr2:64969232(-) A-I      intronic
chr2:64904448(-) A-I      intronic
chr2:64950876(-) A-I      intronic
chr2:64967118(-) A-I      intronic
chr2:64909791(-) A-I      intronic
chr2:64974739(-) A-I      intronic
chr2:64968453(-) A-I      intronic
chr2:64963030(-) A-I      intronic
chr2:64974923(-) A-I      intronic
chr2:64967310(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SERTAD2
chr2:64858881-64858882(-) m6A 3'UTR       27371828
chr2:64858930-64858931(-) m6A 3'UTR       27371828//22608085
chr2:64859084-64859085(-) m6A 3'UTR       24284625//24981863//27371828//22608085
chr2:64859105-64859106(-) m6A 3'UTR       24284625//24981863//27371828//22608085
chr2:64860174-64860175(-) m6A 3'UTR       -
chr2:64861409-64861410(-) m6A 3'UTR       24209618//27773535
chr2:64861492-64861493(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:64861554-64861555(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr2:64861559-64861560(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr2:64861565-64861566(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr2:64861657-64861658(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr2:64861870-64861871(-) m6A 3'UTR       24981863
chr2:64861911-64861912(-) m6A 3'UTR       24981863
chr2:64862256-64862257(-) m6A 3'UTR       27773535
chr2:64862286-64862287(-) m6A 3'UTR       27773535
chr2:64862672-64862673(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr2:64862776-64862777(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64862807-64862808(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64862844-64862845(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863027-64863028(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863050-64863051(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863058-64863059(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863091-64863092(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863106-64863107(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863161-64863162(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863206-64863207(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863286-64863287(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863337-64863338(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863345-64863346(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863384-64863385(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863410-64863411(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:64863505-64863506(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863537-64863538(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:64863774-64863775(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863780-64863781(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863821-64863822(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863864-64863865(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64863890-64863891(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:64880793-64880794(-) m6A 5'UTR//intron       24284625//24209618//27773535
chr2:64977440-64977441(-) m6A exon       24209618//24981863//27371828
chr2:64977505-64977506(-) m6A exon       24209618//27773535
chr2:64977536-64977537(-) m6A exon       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SERTAD2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: SERTAD2

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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