Basic Information:

  VIRBase ID:  

VHID00160816

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          GABPA:  NM_001197297     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	GABPA
miRBase Accession/Entrez ID	MIMAT0010204	2551
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	E4TF1-60//E4TF1A//NFT2//NRF2//NRF2A//RCH04A07

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GABPA	chr21:27107555(+) A-I      5'UTR chr21:27107544(+) A-I      5'UTR chr21:27108902(+) A-I      intronic chr21:27127762(+) A-I      intronic chr21:27120406(+) A-I      intronic chr21:27122043(+) A-I      intronic chr21:27122071(+) A-I      intronic chr21:27127761(+) A-I      intronic chr21:27116195(+) A-I      intronic chr21:27112197(+) A-I      intronic chr21:27116153(+) A-I      intronic chr21:27115049(+) A-I      intronic chr21:27118483(+) A-I      intronic chr21:27113538(+) A-I      intronic chr21:27120247(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GABPA	chr21:27107109-27107110(+) m6A 5'UTR       24981863 chr21:27107116-27107117(+) m6A 5'UTR       24981863 chr21:27107302-27107303(+) m6A 5'UTR       25456834//24981863//27773536//22608085 chr21:27107320-27107321(+) m6A 5'UTR       25456834//24981863//27773536//22608085 chr21:27107350-27107351(+) m6A 5'UTR       25456834//24981863//27773536//22608085 chr21:27107361-27107362(+) m6A 5'UTR       25456834//24981863//27773536//22608085 chr21:27107760-27107761(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773536//22575960 chr21:27113957-27113958(+) m6A CDS//intron       24981863//27773536 chr21:27117529-27117530(+) m6A CDS//exon       24981863//27773536 chr21:27117570-27117571(+) m6A CDS//exon       24981863 chr21:27117580-27117581(+) m6A CDS//exon       24981863 chr21:27136652-27136653(+) m6A CDS       22608085 chr21:27136657-27136658(+) m6A CDS       24209618//24981863//22608085 chr21:27136908-27136909(+) m6A CDS       24209618//24981863//22608085 chr21:27136945-27136946(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27136971-27136972(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27137023-27137024(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27137044-27137045(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27137070-27137071(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27137080-27137081(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141331-27141332(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141390-27141391(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141421-27141422(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141443-27141444(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141452-27141453(+) m6A CDS       24284625//24209618//24981863//22608085 chr21:27141551-27141552(+) m6A 3'UTR       24981863//22608085 chr21:27141561-27141562(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GABPA	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: GABPA

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg