Detail Information

Basic Information:


  VIRBase ID:  

VHID00160788

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           DAPK3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p DAPK3
miRBase
Accession/Entrez ID		 MIMAT0010204 1613
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - DLK//ZIP//ZIPK

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DAPK3
chr19:3966048(-) A-I      intronic
chr19:3962034(-) A-I      intronic
chr19:3962047(-) A-I      intronic
chr19:3962058(-) A-I      intronic
chr19:3962105(-) A-I      intronic
chr19:3962119(-) A-I      intronic
chr19:3962143(-) A-I      intronic
chr19:3962907(-) A-I      intronic
chr19:3962026(-) A-I      intronic
chr19:3962050(-) A-I      intronic
chr19:3962033(-) A-I      intronic
chr19:3962027(-) A-I      intronic
chr19:3962025(-) A-I      intronic
chr19:3961989(-) A-I      intronic
chr19:3961985(-) A-I      intronic
chr19:3961968(-) A-I      intronic
chr19:3961957(-) A-I      intronic
chr19:3961954(-) A-I      intronic
chr19:3961933(-) A-I      intronic
chr19:3961909(-) A-I      intronic
chr19:3962651(-) A-I      intronic
chr19:3962564(-) A-I      intronic
chr19:3962477(-) A-I      intronic
chr19:3963188(-) A-I      intronic
chr19:3962111(-) A-I      intronic
chr19:3962122(-) A-I      intronic
chr19:3962663(-) A-I      intronic
chr19:3969257(-) A-I      intronic
chr19:3968318(-) A-I      intronic
chr19:3962089(-) A-I      intronic
chr19:3965891(-) A-I      intronic
chr19:3965841(-) A-I      intronic
chr19:3965774(-) A-I      intronic
chr19:3965614(-) A-I      intronic
chr19:3965553(-) A-I      intronic
chr19:3965504(-) A-I      intronic
chr19:3965435(-) A-I      intronic
chr19:3965423(-) A-I      intronic
chr19:3965410(-) A-I      intronic
chr19:3965403(-) A-I      intronic
chr19:3963189(-) A-I      intronic
chr19:3963117(-) A-I      intronic
chr19:3963000(-) A-I      intronic
chr19:3962951(-) A-I      intronic
chr19:3962856(-) A-I      intronic
chr19:3962855(-) A-I      intronic
chr19:3962778(-) A-I      intronic
chr19:3962759(-) A-I      intronic
chr19:3962666(-) A-I      intronic
chr19:3962008(-) A-I      intronic
chr19:3967250(-) A-I      intronic
chr19:3961946(-) A-I      intronic
chr19:3962052(-) A-I      intronic
chr19:3962051(-) A-I      intronic
chr19:3960528(-) A-I      intronic
chr19:3962024(-) A-I      intronic
chr19:3962692(-) A-I      intronic
chr19:3962030(-) A-I      intronic
chr19:3962517(-) A-I      intronic
chr19:3962968(-) A-I      intronic
chr19:3963077(-) A-I      intronic
chr19:3962627(-) A-I      intronic
chr19:3962528(-) A-I      intronic
chr19:3963043(-) A-I      intronic
chr19:3963017(-) A-I      intronic
chr19:3965915(-) A-I      intronic
chr19:3962097(-) A-I      intronic
chr19:3966000(-) A-I      intronic
chr19:3962039(-) A-I      intronic
chr19:3963249(-) A-I      intronic
chr19:3962937(-) A-I      intronic
chr19:3968099(-) A-I      intronic
chr19:3962591(-) A-I      intronic
chr19:3967192(-) A-I      intronic
chr19:3965494(-) A-I      intronic
chr19:3963219(-) A-I      intronic
chr19:3968371(-) A-I      intronic
chr19:3967653(-) A-I      intronic
chr19:3965786(-) A-I      intronic
chr19:3962842(-) A-I      intronic
chr19:3962531(-) A-I      intronic
chr19:3965801(-) A-I      intronic
chr19:3962934(-) A-I      intronic
chr19:3965795(-) A-I      intronic
chr19:3962943(-) A-I      intronic
chr19:3962032(-) A-I      intronic
chr19:3962055(-) A-I      intronic
chr19:3968001(-) A-I      intronic
chr19:3968013(-) A-I      intronic
chr19:3962693(-) A-I      intronic
chr19:3965846(-) A-I      intronic
chr19:3963013(-) A-I      intronic
chr19:3962127(-) A-I      intronic
chr19:3968398(-) A-I      intronic
chr19:3962917(-) A-I      intronic
chr19:3961981(-) A-I      intronic
chr19:3961995(-) A-I      intronic
chr19:3965778(-) A-I      intronic
chr19:3962036(-) A-I      intronic
chr19:3962667(-) A-I      intronic
chr19:3962965(-) A-I      intronic
chr19:3962780(-) A-I      intronic
chr19:3968044(-) A-I      intronic
chr19:3965755(-) A-I      intronic
chr19:3968248(-) A-I      intronic
chr19:3965760(-) A-I      intronic
chr19:3961953(-) A-I      intronic
chr19:3965830(-) A-I      intronic
chr19:3967315(-) A-I      intronic
chr19:3969275(-) A-I      intronic
chr19:3963176(-) A-I      intronic
chr19:3965925(-) A-I      intronic
chr19:3961904(-) A-I      intronic
chr19:3963018(-) A-I      intronic
chr19:3969262(-) A-I      intronic
chr19:3963024(-) A-I      intronic
chr19:3962988(-) A-I      intronic
chr19:3962084(-) A-I      intronic
chr19:3962718(-) A-I      intronic
chr19:3961949(-) A-I      intronic
chr19:3965698(-) A-I      intronic
chr19:3965701(-) A-I      intronic
chr19:3962060(-) A-I      intronic
chr19:3962092(-) A-I      intronic
chr19:3962675(-) A-I      intronic
chr19:3965432(-) A-I      intronic
chr19:3962021(-) A-I      intronic
chr19:3968431(-) A-I      intronic
chr19:3962611(-) A-I      intronic
chr19:3963259(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DAPK3
chr19:3962136(-) A-I intron -    21960545
chr19:3962692(-) A-I intron -    21960545
chr19:3962749(-) A-I intron -    21960545
chr19:3965979(-) A-I intron -    21960545
chr19:3966015(-) A-I intron -    21960545
chr19:3961949(-) A-G intron -    22484847
chr19:3961995(-) A-G intron -    22484847
chr19:3962008(-) A-G intron -    22484847
chr19:3962036(-) A-G intron -    22484847
chr19:3962039(-) A-G intron -    22484847
chr19:3962127(-) A-G intron -    22484847
chr19:3962128(-) A-G intron -    22484847
chr19:3962136(-) A-G intron -    22484847
chr19:3962531(-) A-G intron -    22484847
chr19:3962627(-) A-G intron -    22484847
chr19:3962693(-) A-G intron -    22484847
chr19:3962917(-) A-G intron -    22484847
chr19:3963043(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DAPK3
chr19:3958541-3958542(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr19:3958647-3958648(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:3958727-3958728(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr19:3958803-3958804(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr19:3958844-3958845(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3959070-3959071(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3959156-3959157(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr19:3959210-3959211(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr19:3959247-3959248(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3959301-3959302(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3959333-3959334(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3959499-3959500(-) Y CDS//exon       26075521
chr19:3959568-3959569(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr19:3959603-3959604(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr19:3959662-3959663(-) m6A 3'UTR//intron       24284625//24981863//27371828//27773536
chr19:3959716-3959717(-) m6A 3'UTR//intron       24284625
chr19:3960071-3960072(-) m6A CDS//exon       24284625//24981863//27773536
chr19:3961039-3961040(-) m6A CDS//exon       24284625//27773535//27773536
chr19:3961090-3961091(-) m6A CDS//exon       24284625//27773535//27773536
chr19:3961127-3961128(-) m6A CDS//exon       24284625//27773535//27773536
chr19:3961189-3961190(-) m6A exon//intron       24284625
chr19:3961834-3961835(-) m6A exon//intron       27773536
chr19:3963874-3963875(-) m6A CDS       24284625//27773536
chr19:3963901-3963902(-) m6A CDS       24284625//27773536//22575960
chr19:3964267-3964268(-) m6A CDS       24284625//27773536//22575960
chr19:3964348-3964349(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr19:3964363-3964364(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr19:3964797-3964798(-) m6A CDS       24284625//24209618//27773535//27371828//27773536
chr19:3964854-3964855(-) m6A CDS       24284625//24209618//27773535//27371828//27773536
chr19:3969701-3969702(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960
chr19:3969742-3969743(-) m6A 5'UTR       24284625//24209618//27773535//27371828//22575960
chr19:3969811-3969812(-) m6A 5'UTR       24284625//24209618//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DAPK3
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: DAPK3

Evidence Support:


Prediction-Evidence cRep//RNAHybrid
Support Database RepTar//VmiReg

Starting a new search, please wait ...