Basic Information:

  VIRBase ID:  

VHID00160785

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:  MIMAT0010204          CTNS:  NM_001374492     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-3p	CTNS
miRBase Accession/Entrez ID	MIMAT0010204	1497
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CTNS-LSB//PQLC4//SLC66A4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CTNS	chr17:3544137(+) A-I      intronic chr17:3543997(+) A-I      intronic chr17:3564711(+) A-I      3'UTR chr17:3543936(+) A-I      intronic chr17:3546461(+) A-I      intronic chr17:3554222(+) A-I      intronic chr17:3546879(+) A-I      intronic chr17:3546353(+) A-I      intronic chr17:3548978(+) A-I      intronic chr17:3552553(+) A-I      intronic chr17:3552661(+) A-I      intronic chr17:3554518(+) A-I      intronic chr17:3554528(+) A-I      intronic chr17:3554530(+) A-I      intronic chr17:3554538(+) A-I      intronic chr17:3554534(+) A-I      intronic chr17:3545977(+) A-I      intronic chr17:3546445(+) A-I      intronic chr17:3546451(+) A-I      intronic chr17:3556915(+) A-I      intronic chr17:3557047(+) A-I      intronic chr17:3557050(+) A-I      intronic chr17:3546456(+) A-I      intronic chr17:3542791(+) A-I      intronic chr17:3542797(+) A-I      intronic chr17:3542801(+) A-I      intronic chr17:3549966(+) A-I      intronic chr17:3549969(+) A-I      intronic chr17:3553704(+) A-I      3'UTR chr17:3548032(+) A-I      intronic chr17:3554197(+) A-I      intronic chr17:3554371(+) A-I      intronic chr17:3545834(+) A-I      intronic chr17:3549917(+) A-I      intronic chr17:3546961(+) A-I      intronic chr17:3549075(+) A-I      intronic chr17:3548989(+) A-I      intronic chr17:3545927(+) A-I      intronic chr17:3542907(+) A-I      intronic chr17:3547179(+) A-I      intronic chr17:3549844(+) A-I      intronic chr17:3546970(+) A-I      intronic chr17:3554427(+) A-I      intronic chr17:3541794(+) A-I      intronic chr17:3541023(+) A-I      intronic chr17:3548078(+) A-I      intronic chr17:3543937(+) A-I      intronic chr17:3545870(+) A-I      intronic chr17:3543934(+) A-I      intronic chr17:3545726(+) A-I      intronic chr17:3544887(+) A-I      intronic chr17:3544916(+) A-I      intronic chr17:3544010(+) A-I      intronic chr17:3548892(+) A-I      intronic chr17:3552631(+) A-I      intronic chr17:3548898(+) A-I      intronic chr17:3547943(+) A-I      intronic chr17:3554623(+) A-I      intronic chr17:3554277(+) A-I      intronic chr17:3548163(+) A-I      intronic chr17:3544123(+) A-I      intronic chr17:3549007(+) A-I      intronic chr17:3548097(+) A-I      intronic chr17:3548920(+) A-I      intronic chr17:3546878(+) A-I      intronic chr17:3554161(+) A-I      intronic chr17:3548129(+) A-I      intronic chr17:3554359(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CTNS	chr17:3539855-3539856(+) m6A 5'UTR       24981863 chr17:3540012-3540013(+) m6A 5'UTR//intron       24981863 chr17:3540162-3540163(+) m6A 5'UTR//intron       24284625//24981863 chr17:3540423-3540424(+) m6A 5'UTR//exon       24284625 chr17:3540471-3540472(+) m6A 5'UTR//exon       22575960 chr17:3540486-3540487(+) m6A 5'UTR//exon       22575960 chr17:3540529-3540530(+) m6A 5'UTR//exon       22575960 chr17:3558350-3558351(+) m6A 3'UTR//5'UTR//CDS//exon//intron       - chr17:3558390-3558391(+) m6A 3'UTR//5'UTR//CDS//intron       - chr17:3558564-3558565(+) m6A 5'UTR//CDS       22575960 chr17:3563161-3563162(+) m6A CDS       24981863//27773535 chr17:3563212-3563213(+) m6A CDS       24284625//24981863//22575960 chr17:3563553-3563554(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563569-3563570(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563638-3563639(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563658-3563659(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563672-3563673(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563780-3563781(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563789-3563790(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563954-3563955(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3563992-3563993(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3564111-3564112(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3564139-3564140(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:3564575-3564576(+) m6A 3'UTR       27773535 chr17:3564628-3564629(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CTNS	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-3p
Interactor2: CTNS

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg