Detail Information

Basic Information:


  VIRBase ID:  

VHID00160784

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           CSTF3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p CSTF3
miRBase
Accession/Entrez ID		 MIMAT0010204 1479
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CSTF-77

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CSTF3
chr11:33176815(-) A-I      intronic
chr11:33179265(-) A-I      intronic
chr11:33110854(-) A-I      intronic
chr11:33179254(-) A-I      intronic
chr11:33179276(-) A-I      intronic
chr11:33179274(-) A-I      intronic
chr11:33151895(-) A-I      intronic
chr11:33150817(-) A-I      intronic
chr11:33179271(-) A-I      intronic
chr11:33150815(-) A-I      intronic
chr11:33179260(-) A-I      intronic
chr11:33147867(-) A-I      intronic
chr11:33179237(-) A-I      intronic
chr11:33179219(-) A-I      intronic
chr11:33176278(-) A-I      intronic
chr11:33176270(-) A-I      intronic
chr11:33176247(-) A-I      intronic
chr11:33176236(-) A-I      intronic
chr11:33117186(-) A-I      intronic
chr11:33176713(-) A-I      intronic
chr11:33110436(-) A-I      intronic
chr11:33110439(-) A-I      intronic
chr11:33180994(-) A-I      intronic
chr11:33172829(-) A-I      intronic
chr11:33151870(-) A-I      intronic
chr11:33116438(-) A-I      intronic
chr11:33116447(-) A-I      intronic
chr11:33116450(-) A-I      intronic
chr11:33116458(-) A-I      intronic
chr11:33126052(-) A-I      intronic
chr11:33116472(-) A-I      intronic
chr11:33174396(-) A-I      intronic
chr11:33150875(-) A-I      intronic
chr11:33116593(-) A-I      intronic
chr11:33116688(-) A-I      intronic
chr11:33116701(-) A-I      intronic
chr11:33126045(-) A-I      intronic
chr11:33175134(-) A-I      intronic
chr11:33176140(-) A-I      intronic
chr11:33116719(-) A-I      intronic
chr11:33116906(-) A-I      intronic
chr11:33172858(-) A-I      intronic
chr11:33176256(-) A-I      intronic
chr11:33125490(-) A-I      intronic
chr11:33125410(-) A-I      intronic
chr11:33121993(-) A-I      intronic
chr11:33172951(-) A-I      intronic
chr11:33172978(-) A-I      intronic
chr11:33121713(-) A-I      intronic
chr11:33176305(-) A-I      intronic
chr11:33150851(-) A-I      intronic
chr11:33172999(-) A-I      intronic
chr11:33176180(-) A-I      intronic
chr11:33151847(-) A-I      intronic
chr11:33117267(-) A-I      intronic
chr11:33121962(-) A-I      intronic
chr11:33174313(-) A-I      intronic
chr11:33174321(-) A-I      intronic
chr11:33150782(-) A-I      intronic
chr11:33174325(-) A-I      intronic
chr11:33150776(-) A-I      intronic
chr11:33151853(-) A-I      intronic
chr11:33174333(-) A-I      intronic
chr11:33150770(-) A-I      intronic
chr11:33176754(-) A-I      intronic
chr11:33150727(-) A-I      intronic
chr11:33165233(-) A-I      intronic
chr11:33171487(-) A-I      intronic
chr11:33126305(-) A-I      intronic
chr11:33126126(-) A-I      intronic
chr11:33109900(-) A-I      intronic
chr11:33173804(-) A-I      intronic
chr11:33109997(-) A-I      intronic
chr11:33172852(-) A-I      intronic
chr11:33110002(-) A-I      intronic
chr11:33110682(-) A-I      intronic
chr11:33110005(-) A-I      intronic
chr11:33173902(-) A-I      intronic
chr11:33175124(-) A-I      intronic
chr11:33170511(-) A-I      intronic
chr11:33110042(-) A-I      intronic
chr11:33110090(-) A-I      intronic
chr11:33110378(-) A-I      intronic
chr11:33110384(-) A-I      intronic
chr11:33117111(-) A-I      intronic
chr11:33117124(-) A-I      intronic
chr11:33117178(-) A-I      intronic
chr11:33176145(-) A-I      intronic
chr11:33151959(-) A-I      intronic
chr11:33176313(-) A-I      intronic
chr11:33153136(-) A-I      intronic
chr11:33155246(-) A-I      intronic
chr11:33151936(-) A-I      intronic
chr11:33150880(-) A-I      intronic
chr11:33172191(-) A-I      intronic
chr11:33172794(-) A-I      intronic
chr11:33172253(-) A-I      intronic
chr11:33172872(-) A-I      intronic
chr11:33150769(-) A-I      intronic
chr11:33174422(-) A-I      intronic
chr11:33173921(-) A-I      intronic
chr11:33172920(-) A-I      intronic
chr11:33151897(-) A-I      intronic
chr11:33172280(-) A-I      intronic
chr11:33176737(-) A-I      intronic
chr11:33173004(-) A-I      intronic
chr11:33172998(-) A-I      intronic
chr11:33150857(-) A-I      intronic
chr11:33150798(-) A-I      intronic
chr11:33151972(-) A-I      intronic
chr11:33153972(-) A-I      intronic
chr11:33172784(-) A-I      intronic
chr11:33172770(-) A-I      intronic
chr11:33151871(-) A-I      intronic
chr11:33150758(-) A-I      intronic
chr11:33174376(-) A-I      intronic
chr11:33147771(-) A-I      intronic
chr11:33176746(-) A-I      intronic
chr11:33175184(-) A-I      intronic
chr11:33169346(-) A-I      intronic
chr11:33170521(-) A-I      intronic
chr11:33116616(-) A-I      intronic
chr11:33152570(-) A-I      intronic
chr11:33153367(-) A-I      intronic
chr11:33152535(-) A-I      intronic
chr11:33150816(-) A-I      intronic
chr11:33172911(-) A-I      intronic
chr11:33172898(-) A-I      intronic
chr11:33116650(-) A-I      intronic
chr11:33155240(-) A-I      intronic
chr11:33150911(-) A-I      intronic
chr11:33176222(-) A-I      intronic
chr11:33116718(-) A-I      intronic
chr11:33155334(-) A-I      intronic
chr11:33173759(-) A-I      intronic
chr11:33176798(-) A-I      intronic
chr11:33151762(-) A-I      intronic
chr11:33169592(-) A-I      intronic
chr11:33150865(-) A-I      intronic
chr11:33169419(-) A-I      intronic
chr11:33150558(-) A-I      intronic
chr11:33117385(-) A-I      intronic
chr11:33173948(-) A-I      intronic
chr11:33173627(-) A-I      intronic
chr11:33150905(-) A-I      intronic
chr11:33155296(-) A-I      intronic
chr11:33150802(-) A-I      intronic
chr11:33150735(-) A-I      intronic
chr11:33154046(-) A-I      intronic
chr11:33176085(-) A-I      intronic
chr11:33176823(-) A-I      intronic
chr11:33153969(-) A-I      intronic
chr11:33169426(-) A-I      intronic
chr11:33152453(-) A-I      intronic
chr11:33175132(-) A-I      intronic
chr11:33151836(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CSTF3
chr11:33136221(-) T-C intron -    22484847
chr11:33150758(-) A-G intron -    22484847
chr11:33154046(-) A-G intron -    22484847
chr11:33155334(-) A-G intron -    22484847
chr11:33172898(-) A-G intron -    22484847
chr11:33172998(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CSTF3
chr11:33098882-33098883(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr11:33098899-33098900(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr11:33098975-33098976(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr11:33098988-33098989(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr11:33106131-33106132(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085
chr11:33108574-33108575(-) m6A CDS       27773535
chr11:33108579-33108580(-) m6A CDS       27773535
chr11:33108594-33108595(-) m6A CDS       27773535
chr11:33108649-33108650(-) m6A CDS       27773535
chr11:33162990-33162991(-) m6A 3'UTR//intron       27773535
chr11:33163280-33163281(-) m6A 3'UTR//CDS//exon       27773535
chr11:33163294-33163295(-) m6A 3'UTR//CDS//exon       27773535
chr11:33178267-33178268(-) m6A CDS//intron       27773535
chr11:33178299-33178300(-) m6A CDS//intron       24981863
chr11:33178307-33178308(-) m6A CDS//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CSTF3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: CSTF3

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...