Detail Information

Basic Information:


  VIRBase ID:  

VHID00160760

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-3p:           TRIM23:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-3p TRIM23
miRBase
Accession/Entrez ID		 MIMAT0010204 373
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - ARD1//ARFD1//RNF46

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRIM23
chr5:64912677(-) A-I      intronic
chr5:64912386(-) A-I      intronic
chr5:64912216(-) A-I      intronic
chr5:64910975(-) A-I      intronic
chr5:64910801(-) A-I      intronic
chr5:64910476(-) A-I      intronic
chr5:64894459(-) A-I      intronic
chr5:64894452(-) A-I      intronic
chr5:64894438(-) A-I      intronic
chr5:64894414(-) A-I      intronic
chr5:64888190(-) A-I      intronic
chr5:64917766(-) A-I      intronic
chr5:64900123(-) A-I      intronic
chr5:64900140(-) A-I      intronic
chr5:64900135(-) A-I      intronic
chr5:64900126(-) A-I      intronic
chr5:64900125(-) A-I      intronic
chr5:64900117(-) A-I      intronic
chr5:64900116(-) A-I      intronic
chr5:64900115(-) A-I      intronic
chr5:64900110(-) A-I      intronic
chr5:64889059(-) A-I      intronic
chr5:64918303(-) A-I      intronic
chr5:64917863(-) A-I      intronic
chr5:64917116(-) A-I      intronic
chr5:64916819(-) A-I      intronic
chr5:64910827(-) A-I      intronic
chr5:64900030(-) A-I      intronic
chr5:64912229(-) A-I      intronic
chr5:64888168(-) A-I      intronic
chr5:64917752(-) A-I      intronic
chr5:64889122(-) A-I      intronic
chr5:64910399(-) A-I      intronic
chr5:64918164(-) A-I      intronic
chr5:64912357(-) A-I      intronic
chr5:64889005(-) A-I      intronic
chr5:64916818(-) A-I      intronic
chr5:64910800(-) A-I      intronic
chr5:64888088(-) A-I      intronic
chr5:64888208(-) A-I      intronic
chr5:64894366(-) A-I      intronic
chr5:64912347(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRIM23
chr5:64888088(-) A-G intron -    22484847
chr5:64888166(-) A-G intron -    22484847
chr5:64888168(-) A-G intron -    22484847
chr5:64888208(-) A-G intron -    22484847
chr5:64894311(-) A-G intron -    22484847
chr5:64894366(-) A-G intron -    22484847
chr5:64894387(-) T-C intron -    22484847
chr5:64910382(-) A-G intron -    22484847
chr5:64910800(-) A-G intron -    22484847
chr5:64910827(-) A-G intron -    22484847
chr5:64911008(-) A-G intron -    22484847
chr5:64912229(-) A-G intron -    22484847
chr5:64912347(-) A-G intron -    22484847
chr5:64912357(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRIM23
chr5:64885538-64885539(-) m6A 3'UTR       27773535
chr5:64887644-64887645(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:64887661-64887662(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:64887736-64887737(-) m6A CDS       24981863//27773535//22608085
chr5:64890350-64890351(-) m6A CDS       27773535
chr5:64920034-64920035(-) m6A CDS       27371828
chr5:64920060-64920061(-) m6A CDS       24981863//27371828
chr5:64920081-64920082(-) m6A CDS       24981863//27371828
chr5:64920138-64920139(-) m6A 5'UTR       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRIM23
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-3p
Interactor2: TRIM23

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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