Basic Information:

  VIRBase ID:  

VHID00160561

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          SYT14:  NM_001256006     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	SYT14
miRBase Accession/Entrez ID	MIMAT0010203	255928
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SCAR11//sytXIV

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SYT14	chr1:210279912(+) A-I      intronic chr1:210212859(+) A-I      intronic chr1:210212851(+) A-I      intronic chr1:210279801(+) A-I      intronic chr1:210278991(+) A-I      intronic chr1:210261848(+) A-I      intronic chr1:210279913(+) A-I      intronic chr1:210165590(+) A-I      intronic chr1:210279910(+) A-I      intronic chr1:210165514(+) A-I      intronic chr1:210279885(+) A-I      intronic chr1:210279884(+) A-I      intronic chr1:210279860(+) A-I      intronic chr1:210212878(+) A-I      intronic chr1:210212877(+) A-I      intronic chr1:210212869(+) A-I      intronic chr1:210212861(+) A-I      intronic chr1:210225933(+) A-I      intronic chr1:210159695(+) A-I      intronic chr1:210165623(+) A-I      intronic chr1:210165615(+) A-I      intronic chr1:210284194(+) A-I      intronic chr1:210165607(+) A-I      intronic chr1:210165060(+) A-I      intronic chr1:210159722(+) A-I      intronic chr1:210284207(+) A-I      intronic chr1:210284269(+) A-I      intronic chr1:210284272(+) A-I      intronic chr1:210284289(+) A-I      intronic chr1:210284159(+) A-I      intronic chr1:210203751(+) A-I      intronic chr1:210276780(+) A-I      intronic chr1:210276774(+) A-I      intronic chr1:210271435(+) A-I      intronic chr1:210284193(+) A-I      intronic chr1:210284189(+) A-I      intronic chr1:210272210(+) A-I      intronic chr1:210257088(+) A-I      intronic chr1:210276646(+) A-I      intronic chr1:210330203(+) A-I      intronic chr1:210230339(+) A-I      intronic chr1:210271377(+) A-I      intronic chr1:210230050(+) A-I      intronic chr1:210307726(+) A-I      intronic chr1:210276085(+) A-I      intronic chr1:210284263(+) A-I      intronic chr1:210324829(+) A-I      intronic chr1:210293734(+) A-I      intronic chr1:210334259(+) A-I      NonSyn:Lys->Glu chr1:210220953(+) A-I      intronic chr1:210230373(+) A-I      intronic chr1:210159763(+) A-I      intronic chr1:210165019(+) A-I      intronic chr1:210191663(+) A-I      intronic chr1:210230121(+) A-I      intronic chr1:210230060(+) A-I      intronic chr1:210248735(+) A-I      intronic chr1:210279391(+) A-I      intronic chr1:210279746(+) A-I      intronic chr1:210272192(+) A-I      intronic chr1:210330177(+) A-I      intronic chr1:210307634(+) A-I      intronic chr1:210282764(+) A-I      intronic chr1:210299372(+) A-I      intronic chr1:210279144(+) A-I      intronic chr1:210130871(+) A-I      intronic chr1:210330094(+) A-I      intronic chr1:210282802(+) A-I      intronic chr1:210279749(+) A-I      intronic chr1:210330609(+) A-I      intronic chr1:210282864(+) A-I      intronic chr1:210321750(+) A-I      intronic chr1:210165023(+) A-I      intronic chr1:210220924(+) A-I      intronic chr1:210284190(+) A-I      intronic chr1:210220941(+) A-I      intronic chr1:210191717(+) A-I      intronic chr1:210282713(+) A-I      intronic chr1:210308377(+) A-I      intronic chr1:210122762(+) A-I      intronic chr1:210279981(+) A-I      intronic chr1:210282724(+) A-I      intronic chr1:210299452(+) A-I      intronic chr1:210330622(+) A-I      intronic chr1:210312571(+) A-I      intronic chr1:210307714(+) A-I      intronic chr1:210279392(+) A-I      intronic chr1:210165028(+) A-I      intronic chr1:210159811(+) A-I      intronic chr1:210330626(+) A-I      intronic chr1:210282872(+) A-I      intronic chr1:210159808(+) A-I      intronic chr1:210289708(+) A-I      intronic chr1:210282670(+) A-I      intronic chr1:210282873(+) A-I      intronic chr1:210284112(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SYT14	chr1:210334259(+) A-I exon CDS    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SYT14	chr1:210273394-210273395(+) m6A CDS       24981863 chr1:210273463-210273464(+) m6A CDS       24981863 chr1:210273498-210273499(+) m6A CDS       24981863 chr1:210273518-210273519(+) m6A CDS       24209618//24981863//22608085 chr1:210273568-210273569(+) m6A CDS//intron       24209618//24981863 chr1:210273581-210273582(+) m6A CDS//intron       24209618//24981863 chr1:210273598-210273599(+) m6A CDS//intron       24981863 chr1:210273620-210273621(+) m6A CDS//intron       24981863 chr1:210273679-210273680(+) m6A CDS//intron       24981863 chr1:210332802-210332803(+) m6A CDS//intron       24981863 chr1:210334132-210334133(+) m6A 3'UTR//CDS       24209618//24981863 chr1:210334174-210334175(+) m6A 3'UTR//CDS       24209618//24981863 chr1:210334311-210334312(+) m6A 3'UTR//CDS       24209618//25456834//24981863//22608085 chr1:210334324-210334325(+) m6A 3'UTR//CDS       24209618//25456834//24981863//22608085 chr1:210334347-210334348(+) m6A 3'UTR//CDS       24209618//25456834//24981863//22608085 chr1:210335276-210335277(+) m6A 3'UTR       24981863 chr1:210335313-210335314(+) m6A 3'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: SYT14

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg