Basic Information:

  VIRBase ID:  

VHID00160439

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          RDH10:  NM_172037     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	RDH10
miRBase Accession/Entrez ID	MIMAT0010203	157506
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SDR16C4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RDH10	chr8:74213871(+) A-I      intronic chr8:74213492(+) A-I      intronic chr8:74228316(+) A-I      intronic chr8:74228377(+) A-I      intronic chr8:74232872(+) A-I      intronic chr8:74232799(+) A-I      intronic chr8:74228326(+) A-I      intronic chr8:74228378(+) A-I      intronic chr8:74228391(+) A-I      intronic chr8:74228397(+) A-I      intronic chr8:74228427(+) A-I      intronic chr8:74228452(+) A-I      intronic chr8:74228475(+) A-I      intronic chr8:74228488(+) A-I      intronic chr8:74228506(+) A-I      intronic chr8:74232887(+) A-I      intronic chr8:74231747(+) A-I      intronic chr8:74229878(+) A-I      intronic chr8:74229879(+) A-I      intronic chr8:74229884(+) A-I      intronic chr8:74232786(+) A-I      intronic chr8:74228310(+) A-I      intronic chr8:74230070(+) A-I      intronic chr8:74230008(+) A-I      intronic chr8:74229936(+) A-I      intronic chr8:74229901(+) A-I      intronic chr8:74232975(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RDH10	chr8:74207528-74207529(+) m6A CDS       24284625//24209618 chr8:74235197-74235198(+) m6A CDS//exon       24981863 chr8:74235242-74235243(+) m6A CDS//exon       24981863 chr8:74236335-74236336(+) m6A 3'UTR       24981863 chr8:74236371-74236372(+) m6A 3'UTR       24981863//26404942 chr8:74236390-74236391(+) m6A 3'UTR       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RDH10	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: RDH10

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg