Basic Information:

  VIRBase ID:  

VHID00160294

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          PHACTR3:  NM_080672     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	PHACTR3
miRBase Accession/Entrez ID	MIMAT0010203	116154
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf101//H17739//PPP1R123//SCAPIN1//SCAPININ

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHACTR3	chr20:58227450(+) A-I      intronic chr20:58394511(+) A-I      intronic chr20:58227499(+) A-I      intronic chr20:58274769(+) A-I      intronic chr20:58280112(+) A-I      intronic chr20:58369025(+) A-I      intronic chr20:58275909(+) A-I      intronic chr20:58227455(+) A-I      intronic chr20:58315557(+) A-I      intronic chr20:58227331(+) A-I      intronic chr20:58234662(+) A-I      intronic chr20:58390663(+) A-I      intronic chr20:58270854(+) A-I      intronic chr20:58386459(+) A-I      intronic chr20:58257074(+) A-I      intronic chr20:58275868(+) A-I      intronic chr20:58332922(+) A-I      intronic chr20:58394444(+) A-I      intronic chr20:58369032(+) A-I      intronic chr20:58234491(+) A-I      intronic chr20:58228437(+) A-I      intronic chr20:58368074(+) A-I      intronic chr20:58227417(+) A-I      intronic chr20:58187713(+) A-I      intronic chr20:58234497(+) A-I      intronic chr20:58234528(+) A-I      intronic chr20:58274764(+) A-I      intronic chr20:58226160(+) A-I      intronic chr20:58234492(+) A-I      intronic chr20:58234688(+) A-I      intronic chr20:58257061(+) A-I      intronic chr20:58227343(+) A-I      intronic chr20:58227533(+) A-I      intronic chr20:58394222(+) A-I      intronic chr20:58227526(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHACTR3	chr20:58318170-58318171(+) m6A CDS       - chr20:58318217-58318218(+) m6A CDS       - chr20:58318236-58318237(+) m6A CDS       - chr20:58318243-58318244(+) m6A CDS       - chr20:58318270-58318271(+) m6A CDS       - chr20:58318303-58318304(+) m6A CDS       - chr20:58318313-58318314(+) m6A CDS       - chr20:58330250-58330251(+) m6A CDS       - chr20:58330270-58330271(+) m6A CDS       - chr20:58330291-58330292(+) m6A CDS       - chr20:58330365-58330366(+) m6A CDS       - chr20:58348504-58348505(+) m6A CDS       - chr20:58349422-58349423(+) m6A CDS       - chr20:58349430-58349431(+) m6A CDS       - chr20:58349455-58349456(+) m6A CDS       - chr20:58349464-58349465(+) m6A CDS       - chr20:58349483-58349484(+) m6A CDS       - chr20:58381097-58381098(+) m6A CDS       - chr20:58381146-58381147(+) m6A CDS       - chr20:58381159-58381160(+) m6A CDS       - chr20:58381165-58381166(+) m6A CDS       - chr20:58381173-58381174(+) m6A CDS       - chr20:58381179-58381180(+) m6A CDS       - chr20:58381196-58381197(+) m6A CDS       - chr20:58381210-58381211(+) m6A CDS       - chr20:58411222-58411223(+) m6A exon//intron       22608085 chr20:58411243-58411244(+) m6A exon//intron       22608085 chr20:58411260-58411261(+) m6A exon//intron       22608085 chr20:58411269-58411270(+) m6A exon//intron       22608085 chr20:58411307-58411308(+) m6A exon//intron       22608085 chr20:58411334-58411335(+) m6A exon//intron       22608085 chr20:58411574-58411575(+) m6A CDS//exon       - chr20:58415437-58415438(+) m6A CDS//exon       - chr20:58416460-58416461(+) m6A CDS//exon       - chr20:58416483-58416484(+) m6A CDS//exon       - chr20:58422273-58422274(+) m6A 3'UTR//exon       - chr20:58422365-58422366(+) m6A 3'UTR//exon       22608085 chr20:58422403-58422404(+) m6A 3'UTR//exon       22608085 chr20:58422422-58422423(+) m6A 3'UTR//exon       24209618//22608085 chr20:58422448-58422449(+) m6A 3'UTR//exon       24209618//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PHACTR3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: PHACTR3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg