Detail Information

Basic Information:


  VIRBase ID:  

VHID00160231

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:           ZNF468:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-5p ZNF468
miRBase
Accession/Entrez ID		 MIMAT0010203 90333
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF468
chr19:53348388(-) A-I      intronic
chr19:53347996(-) A-I      intronic
chr19:53347140(-) A-I      intronic
chr19:53349092(-) A-I      intronic
chr19:53350248(-) A-I      intronic
chr19:53356773(-) A-I      intronic
chr19:53356779(-) A-I      intronic
chr19:53356820(-) A-I      intronic
chr19:53345929(-) A-I      intronic
chr19:53346372(-) A-I      intronic
chr19:53346598(-) A-I      intronic
chr19:53346624(-) A-I      intronic
chr19:53346662(-) A-I      intronic
chr19:53346665(-) A-I      intronic
chr19:53347181(-) A-I      intronic
chr19:53347210(-) A-I      intronic
chr19:53347859(-) A-I      intronic
chr19:53347868(-) A-I      intronic
chr19:53347962(-) A-I      intronic
chr19:53348362(-) A-I      intronic
chr19:53348829(-) A-I      intronic
chr19:53348860(-) A-I      intronic
chr19:53348874(-) A-I      intronic
chr19:53349023(-) A-I      intronic
chr19:53349060(-) A-I      intronic
chr19:53349137(-) A-I      intronic
chr19:53349156(-) A-I      intronic
chr19:53349204(-) A-I      intronic
chr19:53349515(-) A-I      intronic
chr19:53349550(-) A-I      intronic
chr19:53349555(-) A-I      intronic
chr19:53349559(-) A-I      intronic
chr19:53349617(-) A-I      intronic
chr19:53349685(-) A-I      intronic
chr19:53349734(-) A-I      intronic
chr19:53349742(-) A-I      intronic
chr19:53350122(-) A-I      intronic
chr19:53356832(-) A-I      intronic
chr19:53351868(-) A-I      intronic
chr19:53351974(-) A-I      intronic
chr19:53351980(-) A-I      intronic
chr19:53352001(-) A-I      intronic
chr19:53354635(-) A-I      intronic
chr19:53355362(-) A-I      intronic
chr19:53355447(-) A-I      intronic
chr19:53355495(-) A-I      intronic
chr19:53355537(-) A-I      intronic
chr19:53355672(-) A-I      intronic
chr19:53355759(-) A-I      intronic
chr19:53355802(-) A-I      intronic
chr19:53355843(-) A-I      intronic
chr19:53355846(-) A-I      intronic
chr19:53355847(-) A-I      intronic
chr19:53355872(-) A-I      intronic
chr19:53356229(-) A-I      intronic
chr19:53356278(-) A-I      intronic
chr19:53356279(-) A-I      intronic
chr19:53356282(-) A-I      intronic
chr19:53356313(-) A-I      intronic
chr19:53356329(-) A-I      intronic
chr19:53356861(-) A-I      intronic
chr19:53355830(-) A-I      intronic
chr19:53356375(-) A-I      intronic
chr19:53356389(-) A-I      intronic
chr19:53356685(-) A-I      intronic
chr19:53356730(-) A-I      intronic
chr19:53348457(-) A-I      5'UTR
chr19:53342628(-) A-I      3'UTR
chr19:53342263(-) A-I      3'UTR
chr19:53342607(-) A-I      3'UTR
chr19:53347289(-) A-I      intronic
chr19:53348064(-) A-I      intronic
chr19:53346274(-) A-I      intronic
chr19:53350210(-) A-I      intronic
chr19:53347275(-) A-I      intronic
chr19:53347129(-) A-I      intronic
chr19:53356246(-) A-I      intronic
chr19:53346653(-) A-I      intronic
chr19:53346209(-) A-I      intronic
chr19:53349590(-) A-I      intronic
chr19:53346328(-) A-I      intronic
chr19:53347995(-) A-I      intronic
chr19:53349732(-) A-I      intronic
chr19:53355536(-) A-I      intronic
chr19:53349251(-) A-I      intronic
chr19:53350088(-) A-I      intronic
chr19:53355374(-) A-I      intronic
chr19:53349591(-) A-I      intronic
chr19:53346322(-) A-I      intronic
chr19:53356219(-) A-I      intronic
chr19:53356236(-) A-I      intronic
chr19:53355497(-) A-I      intronic
chr19:53356193(-) A-I      intronic
chr19:53348000(-) A-I      intronic
chr19:53346736(-) A-I      intronic
chr19:53347906(-) A-I      intronic
chr19:53349217(-) A-I      intronic
chr19:53346737(-) A-I      intronic
chr19:53352007(-) A-I      intronic
chr19:53347930(-) A-I      intronic
chr19:53347267(-) A-I      intronic
chr19:53345993(-) A-I      intronic
chr19:53342503(-) A-I      3'UTR
chr19:53351902(-) A-I      intronic
chr19:53347971(-) A-I      intronic
chr19:53350142(-) A-I      intronic
chr19:53342254(-) A-I      3'UTR
chr19:53355375(-) A-I      intronic
chr19:53356252(-) A-I      intronic
chr19:53342601(-) A-I      3'UTR
chr19:53349680(-) A-I      intronic
chr19:53342316(-) A-I      3'UTR
chr19:53350197(-) A-I      intronic
chr19:53347380(-) A-I      intronic
chr19:53347891(-) A-I      intronic
chr19:53348898(-) A-I      intronic
chr19:53348391(-) A-I      intronic
chr19:53346597(-) A-I      intronic
chr19:53347888(-) A-I      intronic
chr19:53347253(-) A-I      intronic
chr19:53342261(-) A-I      3'UTR
chr19:53342597(-) A-I      3'UTR
chr19:53349134(-) A-I      intronic
chr19:53342262(-) A-I      3'UTR
chr19:53346321(-) A-I      intronic
chr19:53349144(-) A-I      intronic
chr19:53350253(-) A-I      intronic
chr19:53350145(-) A-I      intronic
chr19:53351986(-) A-I      intronic
chr19:53348445(-) A-I      5'UTR
chr19:53348471(-) A-I      5'UTR
chr19:53349147(-) A-I      intronic
chr19:53351896(-) A-I      intronic
chr19:53348366(-) A-I      intronic
chr19:53347894(-) A-I      intronic
chr19:53347864(-) A-I      intronic
chr19:53356387(-) A-I      intronic
chr19:53351982(-) A-I      intronic
chr19:53350052(-) A-I      intronic
chr19:53348351(-) A-I      intronic
chr19:53349538(-) A-I      intronic
chr19:53350240(-) A-I      intronic
chr19:53349670(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF468
chr19:53342254(-) A-I exon 3'UTR    15258596
chr19:53342503(-) A-I exon 3'UTR    15258596
chr19:53342700(-) A-I exon 3'UTR    15258596
chr19:53346017(-) A-G intron -    22484847
chr19:53346314(-) A-G intron -    22484847
chr19:53346713(-) A-G intron -    22484847
chr19:53347891(-) A-G intron -    22484847
chr19:53347985(-) A-G intron -    22484847
chr19:53348000(-) A-G intron -    22484847
chr19:53348471(-) A-G exon 5'UTR    22484847
chr19:53350145(-) A-G intron -    22484847
chr19:53351981(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF468
chr19:53341893-53341894(-) m6A 3'UTR       27773535
chr19:53342042-53342043(-) m6A 3'UTR       27773535
chr19:53342602-53342603(-) m6A 3'UTR       27773535
chr19:53342675-53342676(-) m6A 3'UTR       27773535
chr19:53342765-53342766(-) m6A 3'UTR       24284625//27773535//22608085
chr19:53342796-53342797(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:53342812-53342813(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:53342820-53342821(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:53342882-53342883(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53342903-53342904(-) m6A 3'UTR       24284625//27773535//22608085
chr19:53342960-53342961(-) m6A 3'UTR       24284625//27773535//22608085
chr19:53342987-53342988(-) m6A 3'UTR       24284625//27773535//22608085
chr19:53343044-53343045(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343061-53343062(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343092-53343093(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343210-53343211(-) m6A 3'UTR       27773535//22608085
chr19:53343267-53343268(-) m6A 3'UTR       27773535//22608085
chr19:53343294-53343295(-) m6A 3'UTR       27773535//22608085
chr19:53343446-53343447(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343479-53343480(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343545-53343546(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343617-53343618(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343647-53343648(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343674-53343675(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343731-53343732(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343760-53343761(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:53343768-53343769(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:53343816-53343817(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343834-53343835(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343900-53343901(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:53343955-53343956(-) m6A 3'UTR       24284625//27773535//22608085
chr19:53344039-53344040(-) m6A 3'UTR//CDS       27773535
chr19:53344067-53344068(-) m6A 3'UTR//CDS       27773535
chr19:53344111-53344112(-) m6A 3'UTR//CDS       27773535
chr19:53344123-53344124(-) m6A 3'UTR//CDS       27773535
chr19:53344151-53344152(-) m6A 3'UTR//CDS       27773535
chr19:53344235-53344236(-) m6A 3'UTR//CDS       24284625//27773535//27371828//22608085
chr19:53344262-53344263(-) m6A 3'UTR//CDS       24284625//27773535//27371828//22608085
chr19:53344272-53344273(-) m6A 3'UTR//CDS       24284625//27773535//27371828//22608085
chr19:53344319-53344320(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr19:53344346-53344347(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085
chr19:53344403-53344404(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085
chr19:53344421-53344422(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr19:53344487-53344488(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr19:53344514-53344515(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr19:53344571-53344572(-) m6A 3'UTR//CDS       24284625//27773535//22608085
chr19:53344598-53344599(-) m6A 3'UTR//CDS       24284625//27773535//22608085
chr19:53344655-53344656(-) m6A 3'UTR//CDS       24284625//27773535//22608085
chr19:53344711-53344712(-) m6A 3'UTR//CDS       24284625//27773535//22608085
chr19:53344739-53344740(-) m6A 3'UTR//CDS       24284625//27773535//22608085
chr19:53344823-53344824(-) m6A 3'UTR//CDS       24981863//22608085
chr19:53344850-53344851(-) m6A 3'UTR//CDS       24981863//22608085
chr19:53345096-53345097(-) m6A 3'UTR//CDS       27773535
chr19:53345148-53345149(-) m6A 3'UTR//CDS       25456834//27773535//27371828
chr19:53345230-53345231(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:53345268-53345269(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:53345318-53345319(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:53345329-53345330(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr19:53348437-53348438(-) m6A CDS//intron       27773535
chr19:53352353-53352354(-) m6A 3'UTR//CDS       27773535
chr19:53352390-53352391(-) m6A 3'UTR//5'UTR//CDS       27773535
chr19:53352404-53352405(-) m6A 3'UTR//5'UTR//CDS       27773535
chr19:53357330-53357331(-) m6A 5'UTR//CDS//intron       27773535
chr19:53357560-53357561(-) m6A 5'UTR       25456834//24981863//27773535//27371828
chr19:53357582-53357583(-) m6A 5'UTR       25456834//24981863//27773535//27371828
chr19:53360869-53360870(-) m6A 5'UTR       25456834//24981863//27773535//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF468
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-5p
Interactor2: ZNF468

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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