Basic Information:

  VIRBase ID:  

VHID00160195

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          TMEM87B:  NM_032824     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	TMEM87B
miRBase Accession/Entrez ID	MIMAT0010203	84910
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM87B	chr2:112834523(+) A-I      intronic chr2:112833936(+) A-I      intronic chr2:112834074(+) A-I      intronic chr2:112834193(+) A-I      intronic chr2:112834529(+) A-I      intronic chr2:112834545(+) A-I      intronic chr2:112834547(+) A-I      intronic chr2:112834571(+) A-I      intronic chr2:112848083(+) A-I      intronic chr2:112848762(+) A-I      intronic chr2:112818298(+) A-I      intronic chr2:112818248(+) A-I      intronic chr2:112818243(+) A-I      intronic chr2:112834066(+) A-I      intronic chr2:112855622(+) A-I      intronic chr2:112864876(+) A-I      intronic chr2:112864884(+) A-I      intronic chr2:112873451(+) A-I      intronic chr2:112825160(+) A-I      intronic chr2:112825599(+) A-I      intronic chr2:112818207(+) A-I      intronic chr2:112817858(+) A-I      intronic chr2:112817841(+) A-I      intronic chr2:112817815(+) A-I      intronic chr2:112817811(+) A-I      intronic chr2:112825670(+) A-I      intronic chr2:112825671(+) A-I      intronic chr2:112832892(+) A-I      intronic chr2:112833750(+) A-I      intronic chr2:112857483(+) A-I      intronic chr2:112834515(+) A-I      intronic chr2:112818214(+) A-I      intronic chr2:112834179(+) A-I      intronic chr2:112873403(+) A-I      intronic chr2:112834016(+) A-I      intronic chr2:112855627(+) A-I      intronic chr2:112824975(+) A-I      intronic chr2:112848723(+) A-I      intronic chr2:112817741(+) A-I      intronic chr2:112825776(+) A-I      intronic chr2:112848688(+) A-I      intronic chr2:112855633(+) A-I      intronic chr2:112834046(+) A-I      intronic chr2:112834011(+) A-I      intronic chr2:112833719(+) A-I      intronic chr2:112837767(+) A-I      intronic chr2:112834056(+) A-I      intronic chr2:112833754(+) A-I      intronic chr2:112818153(+) A-I      intronic chr2:112855235(+) A-I      intronic chr2:112832791(+) A-I      intronic chr2:112855584(+) A-I      intronic chr2:112848104(+) A-I      intronic chr2:112848116(+) A-I      intronic chr2:112817846(+) A-I      intronic chr2:112832727(+) A-I      intronic chr2:112834532(+) A-I      intronic chr2:112817705(+) A-I      intronic chr2:112848697(+) A-I      intronic chr2:112848103(+) A-I      intronic chr2:112823157(+) A-I      intronic chr2:112832793(+) A-I      intronic chr2:112817670(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM87B	chr2:112848011(+) A-I intron -    21960545 chr2:112834571(+) A-I intron -    21960545 chr2:112855584(+) A-I intron -    21960545 chr2:112817737(+) A-G intron -    22484847 chr2:112817741(+) A-G intron -    22484847 chr2:112817805(+) A-G intron -    22484847 chr2:112817846(+) A-G intron -    22484847 chr2:112818153(+) A-G intron -    22484847 chr2:112818214(+) A-G intron -    22484847 chr2:112823156(+) A-G intron -    22484847 chr2:112824975(+) A-G intron -    22484847 chr2:112825776(+) A-G intron -    22484847 chr2:112834011(+) A-G intron -    22484847 chr2:112834179(+) A-G intron -    22484847 chr2:112834185(+) A-G intron -    22484847 chr2:112834191(+) A-G intron -    22484847 chr2:112848011(+) A-G intron -    22484847 chr2:112848104(+) A-G intron -    22484847 chr2:112848688(+) A-G intron -    22484847 chr2:112848696(+) A-G intron -    22484847 chr2:112848697(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM87B	chr2:112813006-112813007(+) m6A 5'UTR       24284625//25456834//24981863 chr2:112813087-112813088(+) m6A 5'UTR       - chr2:112813273-112813274(+) m6A CDS       24981863 chr2:112873725-112873726(+) m6A 3'UTR//exon       24981863 chr2:112873757-112873758(+) m6A 3'UTR//exon       24981863 chr2:112873773-112873774(+) m6A 3'UTR//exon       24981863 chr2:112876677-112876678(+) m6A 3'UTR       27773535 chr2:112876688-112876689(+) m6A 3'UTR       27773535 chr2:112876697-112876698(+) m6A 3'UTR       27773535 chr2:112876732-112876733(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM87B	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: TMEM87B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg