Detail Information

Basic Information:


  VIRBase ID:  

VHID00160192

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:           CBR4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-5p CBR4
miRBase
Accession/Entrez ID		 MIMAT0010203 84869
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - SDR45C1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CBR4
chr4:169911840(-) A-I      intronic
chr4:169924595(-) A-I      intronic
chr4:169924675(-) A-I      intronic
chr4:169924684(-) A-I      intronic
chr4:169924725(-) A-I      intronic
chr4:169924728(-) A-I      intronic
chr4:169924752(-) A-I      intronic
chr4:169925721(-) A-I      intronic
chr4:169925738(-) A-I      intronic
chr4:169925722(-) A-I      intronic
chr4:169925733(-) A-I      intronic
chr4:169925745(-) A-I      intronic
chr4:169911854(-) A-I      intronic
chr4:169911709(-) A-I      intronic
chr4:169925602(-) A-I      intronic
chr4:169925610(-) A-I      intronic
chr4:169924668(-) A-I      intronic
chr4:169918683(-) A-I      intronic
chr4:169924575(-) A-I      intronic
chr4:169911755(-) A-I      intronic
chr4:169911756(-) A-I      intronic
chr4:169924548(-) A-I      intronic
chr4:169924576(-) A-I      intronic
chr4:169911786(-) A-I      intronic
chr4:169924688(-) A-I      intronic
chr4:169924696(-) A-I      intronic
chr4:169924726(-) A-I      intronic
chr4:169925541(-) A-I      intronic
chr4:169912123(-) A-I      intronic
chr4:169912105(-) A-I      intronic
chr4:169912070(-) A-I      intronic
chr4:169912067(-) A-I      intronic
chr4:169912057(-) A-I      intronic
chr4:169911759(-) A-I      intronic
chr4:169925552(-) A-I      intronic
chr4:169925590(-) A-I      intronic
chr4:169826440(-) A-I      intronic
chr4:169922219(-) A-I      intronic
chr4:169918678(-) A-I      intronic
chr4:169837455(-) A-I      intronic
chr4:169918663(-) A-I      intronic
chr4:169818806(-) A-I      intronic
chr4:169914490(-) A-I      intronic
chr4:169916022(-) A-I      intronic
chr4:169912093(-) A-I      intronic
chr4:169912041(-) A-I      intronic
chr4:169911764(-) A-I      intronic
chr4:169911829(-) A-I      intronic
chr4:169914651(-) A-I      intronic
chr4:169911765(-) A-I      intronic
chr4:169824015(-) A-I      intronic
chr4:169826571(-) A-I      intronic
chr4:169912061(-) A-I      intronic
chr4:169911600(-) A-I      intronic
chr4:169911748(-) A-I      intronic
chr4:169826572(-) A-I      intronic
chr4:169912161(-) A-I      intronic
chr4:169918629(-) A-I      intronic
chr4:169916034(-) A-I      intronic
chr4:169817140(-) A-I      intronic
chr4:169912129(-) A-I      intronic
chr4:169914473(-) A-I      intronic
chr4:169824061(-) A-I      intronic
chr4:169823730(-) A-I      intronic
chr4:169838402(-) A-I      intronic
chr4:169911959(-) A-I      intronic
chr4:169916037(-) A-I      intronic
chr4:169911716(-) A-I      intronic
chr4:169912081(-) A-I      intronic
chr4:169816278(-) A-I      intronic
chr4:169837319(-) A-I      intronic
chr4:169915727(-) A-I      intronic
chr4:169916203(-) A-I      intronic
chr4:169911726(-) A-I      intronic
chr4:169838379(-) A-I      intronic
chr4:169911947(-) A-I      intronic
chr4:169911758(-) A-I      intronic
chr4:169823717(-) A-I      intronic
chr4:169914653(-) A-I      intronic
chr4:169816525(-) A-I      intronic
chr4:169918662(-) A-I      intronic
chr4:169822852(-) A-I      intronic
chr4:169916138(-) A-I      intronic
chr4:169837527(-) A-I      intronic
chr4:169823710(-) A-I      intronic
chr4:169914500(-) A-I      intronic
chr4:169911805(-) A-I      intronic
chr4:169911690(-) A-I      intronic
chr4:169912083(-) A-I      intronic
chr4:169837487(-) A-I      intronic
chr4:169911640(-) A-I      intronic
chr4:169911698(-) A-I      intronic
chr4:169911752(-) A-I      intronic
chr4:169912056(-) A-I      intronic
chr4:169818237(-) A-I      intronic
chr4:169911797(-) A-I      intronic
chr4:169816518(-) A-I      intronic
chr4:169911757(-) A-I      intronic
chr4:169912122(-) A-I      intronic
chr4:169911845(-) A-I      intronic
chr4:169826021(-) A-I      intronic
chr4:169823794(-) A-I      intronic
chr4:169911846(-) A-I      intronic
chr4:169918712(-) A-I      intronic
chr4:169912192(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CBR4
chr4:169911987(-) A-I intron -    22327324
chr4:169918662(-) A-I intron -    22327324
chr4:169924586(-) A-G intron -    22484847
chr4:169925739(-) A-G intron -    22484847
chr4:169911690(-) A-G intron -    22484847
chr4:169911698(-) A-G intron -    22484847
chr4:169911716(-) A-G intron -    22484847
chr4:169911728(-) A-G intron -    22484847
chr4:169911748(-) A-G intron -    22484847
chr4:169911752(-) A-G intron -    22484847
chr4:169911758(-) A-G intron -    22484847
chr4:169911764(-) A-G intron -    22484847
chr4:169911765(-) A-G intron -    22484847
chr4:169911766(-) A-G intron -    22484847
chr4:169911797(-) A-G intron -    22484847
chr4:169911846(-) A-G intron -    22484847
chr4:169911959(-) A-G intron -    22484847
chr4:169911960(-) A-G intron -    22484847
chr4:169911987(-) A-G intron -    22484847
chr4:169912056(-) A-G intron -    22484847
chr4:169912061(-) A-G intron -    22484847
chr4:169912081(-) A-G intron -    22484847
chr4:169912093(-) A-G intron -    22484847
chr4:169912118(-) A-G intron -    22484847
chr4:169912122(-) A-G intron -    22484847
chr4:169912129(-) A-G intron -    22484847
chr4:169912161(-) A-G intron -    22484847
chr4:169914518(-) A-G intron -    22484847
chr4:169914651(-) A-G intron -    22484847
chr4:169914653(-) A-G intron -    22484847
chr4:169918662(-) A-G intron -    22484847
chr4:169918699(-) A-G intron -    22484847
chr4:169918712(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CBR4
chr4:169911398-169911399(-) m6A CDS//intron       27773535
chr4:169911438-169911439(-) m6A CDS//intron       27773535
chr4:169911451-169911452(-) m6A CDS//intron       27773535
chr4:169927944-169927945(-) m6A 3'UTR//CDS       27773535
chr4:169928016-169928017(-) m6A 3'UTR//CDS       27773535
chr4:169928022-169928023(-) m6A 3'UTR//CDS       27773535
chr4:169931235-169931236(-) m6A CDS       24209618//24981863//27773535
chr4:169931295-169931296(-) m6A 5'UTR       24209618//24981863//27773535
chr4:169931322-169931323(-) m6A 5'UTR       24209618//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CBR4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-5p
Interactor2: CBR4

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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