Detail Information

Basic Information:


  VIRBase ID:  

VHID00160180

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:           HOPX:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H4-5p HOPX
miRBase
Accession/Entrez ID		 MIMAT0010203 84525
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CAMEO//HOD//HOP//LAGY//NECC1//OB1//SMAP31//TOTO

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HOPX
chr4:57536184(-) A-I      intronic
chr4:57536176(-) A-I      intronic
chr4:57518715(-) A-I      intronic
chr4:57518877(-) A-I      intronic
chr4:57539982(-) A-I      intronic
chr4:57540017(-) A-I      intronic
chr4:57541006(-) A-I      intronic
chr4:57541011(-) A-I      intronic
chr4:57542395(-) A-I      intronic
chr4:57545322(-) A-I      intronic
chr4:57545370(-) A-I      intronic
chr4:57545755(-) A-I      intronic
chr4:57533677(-) A-I      intronic
chr4:57533670(-) A-I      intronic
chr4:57533657(-) A-I      intronic
chr4:57533650(-) A-I      intronic
chr4:57533639(-) A-I      intronic
chr4:57536220(-) A-I      intronic
chr4:57536223(-) A-I      intronic
chr4:57536216(-) A-I      intronic
chr4:57536208(-) A-I      intronic
chr4:57536203(-) A-I      intronic
chr4:57536195(-) A-I      intronic
chr4:57536194(-) A-I      intronic
chr4:57536187(-) A-I      intronic
chr4:57536185(-) A-I      intronic
chr4:57519332(-) A-I      intronic
chr4:57533939(-) A-I      intronic
chr4:57545843(-) A-I      intronic
chr4:57534013(-) A-I      intronic
chr4:57533965(-) A-I      intronic
chr4:57534065(-) A-I      intronic
chr4:57545167(-) A-I      intronic
chr4:57534030(-) A-I      intronic
chr4:57533949(-) A-I      intronic
chr4:57533969(-) A-I      intronic
chr4:57534018(-) A-I      intronic
chr4:57534043(-) A-I      intronic
chr4:57545673(-) A-I      intronic
chr4:57533996(-) A-I      intronic
chr4:57545207(-) A-I      intronic
chr4:57545258(-) A-I      intronic
chr4:57534021(-) A-I      intronic
chr4:57533946(-) A-I      intronic
chr4:57534012(-) A-I      intronic
chr4:57533986(-) A-I      intronic
chr4:57534095(-) A-I      intronic
chr4:57533929(-) A-I      intronic
chr4:57534120(-) A-I      intronic
chr4:57533936(-) A-I      intronic
chr4:57545221(-) A-I      intronic
chr4:57545206(-) A-I      intronic
chr4:57533933(-) A-I      intronic
chr4:57534096(-) A-I      intronic
chr4:57545179(-) A-I      intronic
chr4:57533983(-) A-I      intronic
chr4:57534341(-) A-I      intronic
chr4:57545308(-) A-I      intronic
chr4:57534068(-) A-I      intronic
chr4:57545313(-) A-I      intronic
chr4:57534744(-) A-I      intronic
chr4:57518769(-) A-I      intronic
chr4:57538940(-) A-I      intronic
chr4:57541160(-) A-I      intronic
chr4:57544885(-) A-I      intronic
chr4:57518809(-) A-I      intronic
chr4:57542428(-) A-I      intronic
chr4:57544718(-) A-I      intronic
chr4:57518857(-) A-I      intronic
chr4:57539955(-) A-I      intronic
chr4:57545740(-) A-I      intronic
chr4:57518756(-) A-I      intronic
chr4:57545925(-) A-I      intronic
chr4:57545871(-) A-I      intronic
chr4:57518794(-) A-I      intronic
chr4:57528757(-) A-I      intronic
chr4:57544845(-) A-I      intronic
chr4:57544750(-) A-I      intronic
chr4:57528742(-) A-I      intronic
chr4:57545227(-) A-I      intronic
chr4:57545782(-) A-I      intronic
chr4:57545364(-) A-I      intronic
chr4:57540160(-) A-I      intronic
chr4:57519465(-) A-I      intronic
chr4:57542352(-) A-I      intronic
chr4:57545704(-) A-I      intronic
chr4:57540009(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HOPX
chr4:57545227(-) A-I intron -    15258596
chr4:57545704(-) A-I intron -    15258596
chr4:57545925(-) A-I intron -    15258596
chr4:57533929(-) A-I intron -    22028664
chr4:57533933(-) A-I intron -    22028664
chr4:57533936(-) A-I intron -    22028664
chr4:57533939(-) A-I intron -    22028664
chr4:57533946(-) A-I intron -    22028664
chr4:57533949(-) A-I intron -    22028664
chr4:57533965(-) A-I intron -    22028664
chr4:57533969(-) A-I intron -    22028664
chr4:57533982(-) A-I intron -    22028664
chr4:57533983(-) A-I intron -    22028664
chr4:57533986(-) A-I intron -    22028664
chr4:57533996(-) A-I intron -    22028664
chr4:57534012(-) A-I intron -    22028664
chr4:57534013(-) A-I intron -    22028664
chr4:57534018(-) A-I intron -    22028664
chr4:57534021(-) A-I intron -    22028664
chr4:57534030(-) A-I intron -    22028664
chr4:57534043(-) A-I intron -    22028664
chr4:57534065(-) A-I intron -    22028664
chr4:57534068(-) A-I intron -    22028664
chr4:57534095(-) A-I intron -    22028664
chr4:57534096(-) A-I intron -    22028664
chr4:57534120(-) A-I intron -    22028664

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HOPX
chr4:57515020-57515021(-) m6A exon//intron       -
chr4:57515078-57515079(-) m6A exon//intron       -
chr4:57515093-57515094(-) m6A exon//intron       -
chr4:57522027-57522028(-) m6A CDS       27371828
chr4:57522131-57522132(-) m6A CDS       27371828
chr4:57522153-57522154(-) m6A CDS       27371828
chr4:57522168-57522169(-) m6A 5'UTR//CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HOPX
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H4-5p
Interactor2: HOPX

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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