Basic Information:

  VIRBase ID:  

VHID00159902

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          PDZD4:  NM_001303515     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	PDZD4
miRBase Accession/Entrez ID	MIMAT0010203	57595
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LNX5//LU1//PDZK4//PDZRN4L

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PDZD4	chrX:153076867(-) A-I      intronic chrX:153088144(-) A-I      intronic chrX:153088287(-) A-I      intronic chrX:153089079(-) A-I      intronic chrX:153087556(-) A-I      intronic chrX:153089025(-) A-I      intronic chrX:153079580(-) A-I      intronic chrX:153088230(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PDZD4	chrX:153067688-153067689(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085 chrX:153067743-153067744(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chrX:153067813-153067814(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153067837-153067838(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153067863-153067864(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153067890-153067891(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153067926-153067927(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153068026-153068027(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153068222-153068223(-) m6A 3'UTR       24284625 chrX:153068271-153068272(-) m6A 3'UTR       24209618 chrX:153068341-153068342(-) m6A 3'UTR       24284625 chrX:153068436-153068437(-) m6A 3'UTR       24284625 chrX:153068771-153068772(-) m6A 3'UTR       24284625//27371828 chrX:153068904-153068905(-) m6A CDS       27371828 chrX:153068919-153068920(-) m6A CDS       27371828 chrX:153068935-153068936(-) m6A CDS       24209618//24981863//27371828 chrX:153069163-153069164(-) Am CDS       - chrX:153069220-153069221(-) m6A CDS       24284625//27371828//27773536 chrX:153069604-153069605(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153069609-153069610(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153069720-153069721(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153069726-153069727(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153070122-153070123(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153070140-153070141(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153070214-153070215(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153070270-153070271(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153070287-153070288(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chrX:153070575-153070576(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chrX:153070642-153070643(-) m6A CDS//exon       24284625//25456834//27371828 chrX:153071038-153071039(-) m6A CDS//exon       24209618 chrX:153071538-153071539(-) m6A 3'UTR//CDS//exon       24209618 chrX:153072263-153072264(-) m6A 3'UTR//CDS//exon       24284625 chrX:153072758-153072759(-) m6A 3'UTR//CDS//exon//intron       24284625 chrX:153073581-153073582(-) m6A CDS//exon//intron       24284625 chrX:153073890-153073891(-) m6A CDS//exon//intron       24284625 chrX:153073904-153073905(-) m6A CDS//exon//intron       24284625 chrX:153073934-153073935(-) m6A CDS//exon//intron       24284625 chrX:153074010-153074011(-) m6A CDS//exon//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PDZD4	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: PDZD4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg