Basic Information:

  VIRBase ID:  

VHID00159886

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          ALPK3:  NM_020778     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	ALPK3
miRBase Accession/Entrez ID	MIMAT0010203	57538
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMH27//MAK//MIDORI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ALPK3	chr15:85390139(+) A-I      intronic chr15:85397701(+) A-I      intronic chr15:85397698(+) A-I      intronic chr15:85397692(+) A-I      intronic chr15:85393637(+) A-I      intronic chr15:85390179(+) A-I      intronic chr15:85389819(+) A-I      intronic chr15:85387116(+) A-I      intronic chr15:85387101(+) A-I      intronic chr15:85385517(+) A-I      intronic chr15:85385474(+) A-I      intronic chr15:85385339(+) A-I      intronic chr15:85393748(+) A-I      intronic chr15:85390002(+) A-I      intronic chr15:85404213(+) A-I      intronic chr15:85393754(+) A-I      intronic chr15:85396747(+) A-I      intronic chr15:85396746(+) A-I      intronic chr15:85389288(+) A-I      intronic chr15:85410423(+) A-I      intronic chr15:85405550(+) A-I      intronic chr15:85387125(+) A-I      intronic chr15:85389170(+) A-I      intronic chr15:85406379(+) A-I      intronic chr15:85387084(+) A-I      intronic chr15:85390057(+) A-I      intronic chr15:85389144(+) A-I      intronic chr15:85385404(+) A-I      intronic chr15:85397618(+) A-I      intronic chr15:85385394(+) A-I      intronic chr15:85393678(+) A-I      intronic chr15:85393808(+) A-I      intronic chr15:85389986(+) A-I      intronic chr15:85410424(+) A-I      intronic chr15:85389131(+) A-I      intronic chr15:85403664(+) A-I      intronic chr15:85391214(+) A-I      intronic chr15:85390076(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ALPK3	chr15:85383245-85383246(+) m6A CDS       25456834//24981863 chr15:85383272-85383273(+) m6A CDS       25456834//24981863 chr15:85383278-85383279(+) m6A CDS       25456834//24981863 chr15:85383540-85383541(+) m6A CDS       25456834//24981863 chr15:85383578-85383579(+) m6A CDS       25456834//24981863 chr15:85383611-85383612(+) m6A CDS       25456834//24981863 chr15:85383699-85383700(+) m6A CDS       25456834//24981863 chr15:85383759-85383760(+) m6A CDS       25456834//24981863 chr15:85383774-85383775(+) m6A CDS       25456834 chr15:85383808-85383809(+) m6A CDS       25456834 chr15:85383815-85383816(+) m6A CDS       25456834 chr15:85399726-85399727(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399742-85399743(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399760-85399761(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399778-85399779(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399832-85399833(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399847-85399848(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399853-85399854(+) m6A CDS       24284625//25456834//24981863//27773535 chr15:85399865-85399866(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr15:85399901-85399902(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr15:85399929-85399930(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr15:85399973-85399974(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr15:85399985-85399986(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr15:85400016-85400017(+) m6A CDS       25456834//24981863//27773535 chr15:85400052-85400053(+) m6A CDS       25456834//24981863//27773535 chr15:85400180-85400181(+) m6A CDS       25456834 chr15:85400188-85400189(+) m6A CDS       25456834 chr15:85400243-85400244(+) m6A CDS       25456834 chr15:85400272-85400273(+) m6A CDS       25456834 chr15:85400322-85400323(+) m6A CDS       25456834 chr15:85400333-85400334(+) m6A CDS       25456834 chr15:85400358-85400359(+) m6A CDS       25456834//24981863 chr15:85400466-85400467(+) m6A CDS       25456834//24981863 chr15:85400585-85400586(+) m6A CDS       - chr15:85400720-85400721(+) m6A CDS       25456834 chr15:85400747-85400748(+) m6A CDS       25456834 chr15:85400804-85400805(+) m6A CDS       25456834 chr15:85400853-85400854(+) m6A CDS       25456834//24981863 chr15:85400891-85400892(+) m6A CDS       25456834//24981863 chr15:85400996-85400997(+) m6A CDS       25456834//24981863 chr15:85401027-85401028(+) m6A CDS       25456834//24981863 chr15:85401053-85401054(+) m6A CDS       25456834//24981863 chr15:85401102-85401103(+) m6A CDS       25456834//24981863 chr15:85401207-85401208(+) m6A CDS       25456834 chr15:85401343-85401344(+) m6A CDS       25456834 chr15:85401442-85401443(+) m6A CDS       25456834 chr15:85401587-85401588(+) m6A CDS       25456834 chr15:85401678-85401679(+) m6A CDS       25456834 chr15:85401711-85401712(+) m6A CDS       25456834 chr15:85401746-85401747(+) m6A CDS       - chr15:85401774-85401775(+) m6A CDS       - chr15:85411638-85411639(+) m6A CDS       24284625//25456834 chr15:85411723-85411724(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85411744-85411745(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85411755-85411756(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85411771-85411772(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85411798-85411799(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85411811-85411812(+) m6A 3'UTR       24284625//25456834//24981863 chr15:85413558-85413559(+) m6A 3'UTR       24981863 chr15:85413613-85413614(+) m6A 3'UTR       25456834//24981863 chr15:85413641-85413642(+) m6A 3'UTR       25456834//24981863 chr15:85413696-85413697(+) m6A 3'UTR       25456834//24981863 chr15:85413737-85413738(+) m6A 3'UTR       25456834//24981863 chr15:85413743-85413744(+) m6A 3'UTR       25456834//24981863 chr15:85413799-85413800(+) m6A 3'UTR       25456834//24981863 chr15:85413816-85413817(+) m6A 3'UTR       25456834//24981863 chr15:85413963-85413964(+) m6A 3'UTR       25456834//24981863 chr15:85414024-85414025(+) m6A 3'UTR       25456834//24981863 chr15:85414080-85414081(+) m6A 3'UTR       25456834//24981863 chr15:85414153-85414154(+) m6A 3'UTR       25456834 chr15:85414400-85414401(+) m6A 3'UTR       25456834//24981863 chr15:85414413-85414414(+) m6A 3'UTR       25456834//24981863 chr15:85414433-85414434(+) m6A 3'UTR       25456834//24981863 chr15:85414453-85414454(+) m6A 3'UTR       25456834//24981863 chr15:85414459-85414460(+) m6A 3'UTR       25456834//24981863 chr15:85414517-85414518(+) m6A 3'UTR       24981863 chr15:85414532-85414533(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ALPK3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: ALPK3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg