Basic Information:

  VIRBase ID:  

VHID00159806

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          UBFD1:  NM_019116     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	UBFD1
miRBase Accession/Entrez ID	MIMAT0010203	56061
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	UBPH

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UBFD1	chr16:23579622(+) A-I      intronic chr16:23579646(+) A-I      intronic chr16:23580833(+) A-I      intronic chr16:23579987(+) A-I      intronic chr16:23579939(+) A-I      intronic chr16:23579922(+) A-I      intronic chr16:23579895(+) A-I      intronic chr16:23579678(+) A-I      intronic chr16:23579666(+) A-I      intronic chr16:23579661(+) A-I      intronic chr16:23579655(+) A-I      intronic chr16:23579638(+) A-I      intronic chr16:23579574(+) A-I      intronic chr16:23580033(+) A-I      intronic chr16:23579993(+) A-I      intronic chr16:23579691(+) A-I      intronic chr16:23579963(+) A-I      intronic chr16:23579681(+) A-I      intronic chr16:23579610(+) A-I      intronic chr16:23579988(+) A-I      intronic chr16:23577905(+) A-I      intronic chr16:23579887(+) A-I      intronic chr16:23580729(+) A-I      intronic chr16:23579633(+) A-I      intronic chr16:23577917(+) A-I      intronic chr16:23577799(+) A-I      intronic chr16:23577847(+) A-I      intronic chr16:23580689(+) A-I      intronic chr16:23579864(+) A-I      intronic chr16:23579979(+) A-I      intronic chr16:23580020(+) A-I      intronic chr16:23579740(+) A-I      intronic chr16:23579753(+) A-I      intronic chr16:23580737(+) A-I      intronic chr16:23579620(+) A-I      intronic chr16:23579545(+) A-I      intronic chr16:23579984(+) A-I      intronic chr16:23580673(+) A-I      intronic chr16:23580777(+) A-I      intronic chr16:23580029(+) A-I      intronic chr16:23580603(+) A-I      intronic chr16:23579555(+) A-I      intronic chr16:23579953(+) A-I      intronic chr16:23580069(+) A-I      intronic chr16:23580755(+) A-I      intronic chr16:23579741(+) A-I      intronic chr16:23577961(+) A-I      intronic chr16:23579892(+) A-I      intronic chr16:23580070(+) A-I      intronic chr16:23580765(+) A-I      intronic chr16:23580082(+) A-I      intronic chr16:23579975(+) A-I      intronic chr16:23580699(+) A-I      intronic chr16:23579954(+) A-I      intronic chr16:23579978(+) A-I      intronic chr16:23580025(+) A-I      intronic chr16:23579981(+) A-I      intronic chr16:23580826(+) A-I      intronic chr16:23579980(+) A-I      intronic chr16:23580019(+) A-I      intronic chr16:23580112(+) A-I      intronic chr16:23579664(+) A-I      intronic chr16:23580756(+) A-I      intronic chr16:23579886(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	UBFD1	chr16:23580019(+) A-I intron -    15342557 chr16:23580020(+) A-I intron -    15342557 chr16:23580025(+) A-I intron -    15342557 chr16:23580112(+) A-I intron -    15342557 chr16:23580603(+) A-I intron -    15342557 chr16:23580756(+) A-I intron -    15342557 chr16:23580777(+) A-I intron -    15342557 chr16:23570696(+) C-A intron -    22484847 chr16:23579610(+) A-G intron -    22484847 chr16:23579930(+) A-G intron -    22484847 chr16:23579954(+) A-G intron -    22484847 chr16:23579978(+) A-G intron -    22484847 chr16:23579980(+) A-G intron -    22484847 chr16:23580019(+) A-G intron -    22484847 chr16:23580020(+) A-G intron -    22484847 chr16:23580025(+) A-G intron -    22484847 chr16:23580112(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UBFD1	chr16:23568712-23568713(+) m6A 5'UTR       24981863 chr16:23568910-23568911(+) m6A 5'UTR       24981863 chr16:23568943-23568944(+) m6A 5'UTR       24981863 chr16:23569175-23569176(+) m6A exon//intron       24981863 chr16:23569211-23569212(+) m6A exon//intron       24209618//25456834//24981863 chr16:23569280-23569281(+) m6A CDS//exon       24209618//25456834//24981863 chr16:23569291-23569292(+) m6A CDS//exon       24209618//25456834//24981863 chr16:23569305-23569306(+) m6A CDS//exon       24209618//25456834//24981863//22575960 chr16:23569381-23569382(+) m6A CDS//exon       24209618//24981863//22575960 chr16:23569435-23569436(+) m6A CDS//exon       24209618//27773536//22575960 chr16:23569504-23569505(+) m6A CDS//exon       24209618 chr16:23569527-23569528(+) m6A CDS//exon       24209618 chr16:23569555-23569556(+) m6A CDS//exon       24209618 chr16:23569577-23569578(+) m6A CDS//exon       24209618 chr16:23570923-23570924(+) m6A CDS//exon       24981863 chr16:23570968-23570969(+) m6A CDS//exon       24981863 chr16:23578356-23578357(+) m6A CDS//exon       24284625 chr16:23578368-23578369(+) m6A CDS//exon       24284625 chr16:23578376-23578377(+) m6A CDS//exon       24284625//24981863 chr16:23581879-23581880(+) m6A CDS//exon       24284625//24981863//22608085 chr16:23581937-23581938(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr16:23581955-23581956(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr16:23582003-23582004(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr16:23584662-23584663(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	UBFD1	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: UBFD1

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg