Basic Information:

  VIRBase ID:  

VHID00159733

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          FANCI:  NM_001113378     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	FANCI
miRBase Accession/Entrez ID	MIMAT0010203	55215
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KIAA1794

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FANCI	chr15:89808594(+) A-I      intronic chr15:89839104(+) A-I      intronic chr15:89839328(+) A-I      intronic chr15:89839079(+) A-I      intronic chr15:89839098(+) A-I      intronic chr15:89839278(+) A-I      intronic chr15:89814968(+) A-I      intronic chr15:89808568(+) A-I      intronic chr15:89797949(+) A-I      intronic chr15:89811471(+) A-I      intronic chr15:89838737(+) A-I      intronic chr15:89811375(+) A-I      intronic chr15:89811369(+) A-I      intronic chr15:89792664(+) A-I      intronic chr15:89792691(+) A-I      intronic chr15:89792696(+) A-I      intronic chr15:89810886(+) A-I      intronic chr15:89792745(+) A-I      intronic chr15:89792814(+) A-I      intronic chr15:89795437(+) A-I      intronic chr15:89795440(+) A-I      intronic chr15:89811351(+) A-I      intronic chr15:89811029(+) A-I      intronic chr15:89810996(+) A-I      intronic chr15:89810938(+) A-I      intronic chr15:89795446(+) A-I      intronic chr15:89795452(+) A-I      intronic chr15:89797352(+) A-I      intronic chr15:89808538(+) A-I      intronic chr15:89839591(+) A-I      intronic chr15:89839580(+) A-I      intronic chr15:89839418(+) A-I      intronic chr15:89839376(+) A-I      intronic chr15:89839316(+) A-I      intronic chr15:89839085(+) A-I      intronic chr15:89839030(+) A-I      intronic chr15:89838707(+) A-I      intronic chr15:89828747(+) A-I      intronic chr15:89828671(+) A-I      intronic chr15:89828624(+) A-I      intronic chr15:89828612(+) A-I      intronic chr15:89816180(+) A-I      intronic chr15:89814863(+) A-I      intronic chr15:89811563(+) A-I      intronic chr15:89811479(+) A-I      intronic chr15:89808580(+) A-I      intronic chr15:89810323(+) A-I      intronic chr15:89810555(+) A-I      intronic chr15:89810560(+) A-I      intronic chr15:89811443(+) A-I      intronic chr15:89816424(+) A-I      intronic chr15:89808658(+) A-I      intronic chr15:89839082(+) A-I      intronic chr15:89792817(+) A-I      intronic chr15:89797369(+) A-I      intronic chr15:89811037(+) A-I      intronic chr15:89839370(+) A-I      intronic chr15:89811506(+) A-I      intronic chr15:89838696(+) A-I      intronic chr15:89838519(+) A-I      intronic chr15:89811051(+) A-I      intronic chr15:89839541(+) A-I      intronic chr15:89839108(+) A-I      intronic chr15:89809493(+) A-I      intronic chr15:89809956(+) A-I      intronic chr15:89839385(+) A-I      intronic chr15:89816437(+) A-I      intronic chr15:89838736(+) A-I      intronic chr15:89839056(+) A-I      intronic chr15:89839279(+) A-I      intronic chr15:89838641(+) A-I      intronic chr15:89816436(+) A-I      intronic chr15:89810909(+) A-I      intronic chr15:89808494(+) A-I      intronic chr15:89816349(+) A-I      intronic chr15:89792822(+) A-I      intronic chr15:89809939(+) A-I      intronic chr15:89838478(+) A-I      intronic chr15:89792721(+) A-I      intronic chr15:89839299(+) A-I      intronic chr15:89839522(+) A-I      intronic chr15:89809305(+) A-I      intronic chr15:89839574(+) A-I      intronic chr15:89792653(+) A-I      intronic chr15:89839324(+) A-I      intronic chr15:89838487(+) A-I      intronic chr15:89838495(+) A-I      intronic chr15:89810476(+) A-I      intronic chr15:89810327(+) A-I      intronic chr15:89795381(+) A-I      intronic chr15:89839379(+) A-I      intronic chr15:89808532(+) A-I      intronic chr15:89838741(+) A-I      intronic chr15:89838786(+) A-I      intronic chr15:89839084(+) A-I      intronic chr15:89828751(+) A-I      intronic chr15:89839069(+) A-I      intronic chr15:89792779(+) A-I      intronic chr15:89810471(+) A-I      intronic chr15:89838735(+) A-I      intronic chr15:89816019(+) A-I      intronic chr15:89795355(+) A-I      intronic chr15:89811438(+) A-I      intronic chr15:89839405(+) A-I      intronic chr15:89811476(+) A-I      intronic chr15:89839117(+) A-I      intronic chr15:89838808(+) A-I      intronic chr15:89811509(+) A-I      intronic chr15:89839247(+) A-I      intronic chr15:89838818(+) A-I      intronic chr15:89838505(+) A-I      intronic chr15:89795384(+) A-I      intronic chr15:89838477(+) A-I      intronic chr15:89837652(+) A-I      intronic chr15:89815006(+) A-I      intronic chr15:89838726(+) A-I      intronic chr15:89811451(+) A-I      intronic chr15:89842132(+) A-I      intronic chr15:89838838(+) A-I      intronic chr15:89810305(+) A-I      intronic chr15:89797893(+) A-I      intronic chr15:89838491(+) A-I      intronic chr15:89811021(+) A-I      intronic chr15:89839469(+) A-I      intronic chr15:89808539(+) A-I      intronic chr15:89838628(+) A-I      intronic chr15:89808776(+) A-I      intronic chr15:89839298(+) A-I      intronic chr15:89838803(+) A-I      intronic chr15:89839600(+) A-I      intronic chr15:89795707(+) A-I      intronic chr15:89838513(+) A-I      intronic chr15:89797853(+) A-I      intronic chr15:89838847(+) A-I      intronic chr15:89811425(+) A-I      intronic chr15:89838633(+) A-I      intronic chr15:89797839(+) A-I      intronic chr15:89792744(+) A-I      intronic chr15:89809660(+) A-I      intronic chr15:89792157(+) A-I      intronic chr15:89792224(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FANCI	chr15:89839541(+) A-I intron -    22327324 chr15:89792822(+) A-G intron -    22484847 chr15:89795355(+) A-G intron -    22484847 chr15:89795381(+) A-G intron -    22484847 chr15:89797893(+) A-G intron -    22484847 chr15:89810327(+) A-G intron -    22484847 chr15:89811425(+) A-G intron -    22484847 chr15:89811506(+) A-G intron -    22484847 chr15:89811509(+) A-G intron -    22484847 chr15:89816436(+) A-G intron -    22484847 chr15:89838477(+) A-G intron -    22484847 chr15:89838478(+) A-G intron -    22484847 chr15:89838491(+) A-G intron -    22484847 chr15:89838495(+) A-G intron -    22484847 chr15:89838505(+) A-G intron -    22484847 chr15:89838519(+) A-G intron -    22484847 chr15:89838726(+) A-G intron -    22484847 chr15:89838786(+) A-G intron -    22484847 chr15:89838803(+) A-G intron -    22484847 chr15:89839056(+) A-G intron -    22484847 chr15:89839082(+) A-G intron -    22484847 chr15:89839117(+) A-G intron -    22484847 chr15:89839247(+) A-G intron -    22484847 chr15:89839298(+) A-G intron -    22484847 chr15:89839541(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FANCI	chr15:89836027-89836028(+) m6A CDS//exon//intron       24981863//26404942 chr15:89836084-89836085(+) m6A CDS//exon//intron       24981863//26404942 chr15:89836091-89836092(+) m6A CDS//exon//intron       24981863//26404942 chr15:89843088-89843089(+) Gm CDS//exon//intron       - chr15:89843589-89843590(+) m6A CDS//exon//intron       24981863 chr15:89851152-89851153(+) m6A exon//intron       25456834 chr15:89851174-89851175(+) m6A exon//intron       25456834//22608085 chr15:89857895-89857896(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr15:89858516-89858517(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr15:89858552-89858553(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr15:89858570-89858571(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr15:89858579-89858580(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr15:89859650-89859651(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:89859655-89859656(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:89859662-89859663(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:89859713-89859714(+) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22608085 chr15:89859801-89859802(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//27371828//22608085 chr15:89860098-89860099(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr15:89860170-89860171(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FANCI	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: FANCI

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg