Basic Information:

  VIRBase ID:  

VHID00159707

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          TXNL4B:  NM_001142318     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	TXNL4B
miRBase Accession/Entrez ID	MIMAT0010203	54957
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Dim2//DLP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TXNL4B	chr16:72124025(-) A-I      intronic chr16:72124003(-) A-I      intronic chr16:72123985(-) A-I      intronic chr16:72119780(-) A-I      3'UTR chr16:72119839(-) A-I      3'UTR chr16:72119845(-) A-I      3'UTR chr16:72121701(-) A-I      intronic chr16:72123997(-) A-I      intronic chr16:72122027(-) A-I      intronic chr16:72121628(-) A-I      intronic chr16:72121702(-) A-I      intronic chr16:72119736(-) A-I      3'UTR chr16:72126934(-) A-I      intronic chr16:72121973(-) A-I      intronic chr16:72126145(-) A-I      intronic chr16:72121827(-) A-I      intronic chr16:72119669(-) A-I      3'UTR chr16:72119714(-) A-I      3'UTR chr16:72119709(-) A-I      3'UTR chr16:72119221(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TXNL4B	chr16:72118789-72118790(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72118804-72118805(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72118811-72118812(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72118854-72118855(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72118874-72118875(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72119002-72119003(-) m6A 3'UTR//intron       24209618 chr16:72120174-72120175(-) m6A 3'UTR//intron       24981863//27773535 chr16:72120225-72120226(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72120235-72120236(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72120381-72120382(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr16:72120401-72120402(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72120444-72120445(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr16:72120542-72120543(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22608085 chr16:72120653-72120654(-) m6A 3'UTR//CDS//intron       24981863//27773535//22608085 chr16:72120658-72120659(-) m6A 3'UTR//CDS//intron       24981863//22608085 chr16:72120663-72120664(-) m6A 3'UTR//CDS//intron       24981863//22608085 chr16:72127692-72127693(-) m6A 5'UTR//intron       24981863 chr16:72128207-72128208(-) m6A 5'UTR       24284625//27371828 chr16:72128274-72128275(-) m6A 5'UTR       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TXNL4B	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: TXNL4B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg