Basic Information:

  VIRBase ID:  

VHID00159417

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          SIRT3:  NR_163390     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	SIRT3
miRBase Accession/Entrez ID	MIMAT0010203	23410
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SIR2L3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SIRT3	chr11:232256(-) A-I      intronic chr11:232255(-) A-I      intronic chr11:232207(-) A-I      intronic chr11:232250(-) A-I      intronic chr11:230905(-) A-I      intronic chr11:232210(-) A-I      intronic chr11:234419(-) A-I      intronic chr11:227790(-) A-I      intronic chr11:234553(-) A-I      intronic chr11:221362(-) A-I      intronic chr11:221357(-) A-I      intronic chr11:235091(-) A-I      intronic chr11:221353(-) A-I      intronic chr11:221211(-) A-I      intronic chr11:230880(-) A-I      intronic chr11:230906(-) A-I      intronic chr11:227817(-) A-I      intronic chr11:227275(-) A-I      intronic chr11:234414(-) A-I      intronic chr11:231042(-) A-I      intronic chr11:230984(-) A-I      intronic chr11:230091(-) A-I      intronic chr11:230131(-) A-I      intronic chr11:227355(-) A-I      intronic chr11:231404(-) A-I      intronic chr11:230932(-) A-I      intronic chr11:227824(-) A-I      intronic chr11:226894(-) A-I      intronic chr11:235406(-) A-I      intronic chr11:235206(-) A-I      intronic chr11:226891(-) A-I      intronic chr11:230961(-) A-I      intronic chr11:226520(-) A-I      intronic chr11:230130(-) A-I      intronic chr11:231314(-) A-I      intronic chr11:215303(-) A-I      3'UTR chr11:227432(-) A-I      intronic chr11:235042(-) A-I      intronic chr11:227793(-) A-I      intronic chr11:232392(-) A-I      intronic chr11:221342(-) A-I      intronic chr11:235434(-) A-I      intronic chr11:221293(-) A-I      intronic chr11:227721(-) A-I      intronic chr11:232391(-) A-I      intronic chr11:231002(-) A-I      intronic chr11:230976(-) A-I      intronic chr11:221197(-) A-I      intronic chr11:221284(-) A-I      intronic chr11:226850(-) A-I      intronic chr11:221272(-) A-I      intronic chr11:231012(-) A-I      intronic chr11:235478(-) A-I      intronic chr11:221242(-) A-I      intronic chr11:227289(-) A-I      intronic chr11:232315(-) A-I      intronic chr11:230944(-) A-I      intronic chr11:226882(-) A-I      intronic chr11:227783(-) A-I      intronic chr11:227826(-) A-I      intronic chr11:235491(-) A-I      intronic chr11:227375(-) A-I      intronic chr11:232398(-) A-I      intronic chr11:229737(-) A-I      intronic chr11:231098(-) A-I      intronic chr11:235381(-) A-I      intronic chr11:231073(-) A-I      intronic chr11:227246(-) A-I      intronic chr11:232351(-) A-I      intronic chr11:220247(-) A-I      intronic chr11:226918(-) A-I      intronic chr11:234442(-) A-I      intronic chr11:221230(-) A-I      intronic chr11:226851(-) A-I      intronic chr11:230986(-) A-I      intronic chr11:215249(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIRT3	chr11:215467-215468(-) m6A 3'UTR       27773535 chr11:215496-215497(-) m6A 3'UTR       27773535 chr11:215587-215588(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr11:215610-215611(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr11:215762-215763(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:215820-215821(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:215845-215846(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:215945-215946(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:215961-215962(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr11:216063-216064(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:216074-216075(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:216106-216107(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:216137-216138(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr11:216297-216298(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:216361-216362(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:216378-216379(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:216388-216389(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:216449-216450(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:216575-216576(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:216584-216585(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:216598-216599(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:216616-216617(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:216631-216632(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:216656-216657(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:216704-216705(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:216709-216710(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:218811-218812(-) m6A 3'UTR//CDS//intron       24284625//24209618//27773535//27371828 chr11:218824-218825(-) m6A 3'UTR//CDS//intron       24284625//24209618//27773535//27371828 chr11:218839-218840(-) m6A 3'UTR//CDS       24284625//24209618//27773535//27371828 chr11:218856-218857(-) m6A 3'UTR//CDS       24284625//24209618//27773535//27371828 chr11:218872-218873(-) m6A 3'UTR//CDS       24284625//24209618//27773535//27371828 chr11:218973-218974(-) m6A 3'UTR//CDS       24284625//24981863 chr11:222748-222749(-) m1A 3'UTR//intron       26863196 chr11:233080-233081(-) m6A 3'UTR//CDS//exon//intron       - chr11:233145-233146(-) m6A 3'UTR//CDS//exon//intron       27773535 chr11:233348-233349(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIRT3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: SIRT3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg