Basic Information:

  VIRBase ID:  

VHID00159179

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          CALCRL:  NM_001271751     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	CALCRL
miRBase Accession/Entrez ID	MIMAT0010203	10203
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CGRPR//CRLR//LMPHM8

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CALCRL	chr2:188253993(-) A-I      intronic chr2:188253973(-) A-I      intronic chr2:188253970(-) A-I      intronic chr2:188253964(-) A-I      intronic chr2:188254003(-) A-I      intronic chr2:188283686(-) A-I      intronic chr2:188283721(-) A-I      intronic chr2:188253923(-) A-I      intronic chr2:188253937(-) A-I      intronic chr2:188253938(-) A-I      intronic chr2:188254079(-) A-I      intronic chr2:188283748(-) A-I      intronic chr2:188283805(-) A-I      intronic chr2:188283744(-) A-I      intronic chr2:188283820(-) A-I      intronic chr2:188283829(-) A-I      intronic chr2:188283837(-) A-I      intronic chr2:188283856(-) A-I      intronic chr2:188283722(-) A-I      intronic chr2:188283806(-) A-I      intronic chr2:188254073(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CALCRL	chr2:188210831-188210832(-) m6A 3'UTR       24981863//27773535//22608085 chr2:188210854-188210855(-) m6A 3'UTR       24981863//27773535//22608085 chr2:188210860-188210861(-) m6A 3'UTR       24981863//27773535//22608085 chr2:188210931-188210932(-) m6A CDS       24981863//27773535//22608085 chr2:188210979-188210980(-) m6A CDS       27773535 chr2:188312930-188312931(-) m6A 5'UTR//exon       24981863 chr2:188312975-188312976(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CALCRL	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: CALCRL

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg