Basic Information:

  VIRBase ID:  

VHID00158601

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          PPP1R12A:  NM_001143885     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	PPP1R12A
miRBase Accession/Entrez ID	MIMAT0010203	4659
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GUBS//M130//MBS//MYPT1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP1R12A	chr12:80209201(-) A-I      intronic chr12:80253607(-) A-I      intronic chr12:80209214(-) A-I      intronic chr12:80253594(-) A-I      intronic chr12:80253637(-) A-I      intronic chr12:80253625(-) A-I      intronic chr12:80253647(-) A-I      intronic chr12:80253612(-) A-I      intronic chr12:80209218(-) A-I      intronic chr12:80209188(-) A-I      intronic chr12:80193736(-) A-I      intronic chr12:80193617(-) A-I      intronic chr12:80193162(-) A-I      intronic chr12:80193039(-) A-I      intronic chr12:80193050(-) A-I      intronic chr12:80193104(-) A-I      intronic chr12:80193741(-) A-I      intronic chr12:80209189(-) A-I      intronic chr12:80194606(-) A-I      intronic chr12:80194610(-) A-I      intronic chr12:80194611(-) A-I      intronic chr12:80194642(-) A-I      intronic chr12:80194646(-) A-I      intronic chr12:80194674(-) A-I      intronic chr12:80194694(-) A-I      intronic chr12:80194708(-) A-I      intronic chr12:80194718(-) A-I      intronic chr12:80195003(-) A-I      intronic chr12:80195009(-) A-I      intronic chr12:80195013(-) A-I      intronic chr12:80195073(-) A-I      intronic chr12:80237110(-) A-I      intronic chr12:80237613(-) A-I      intronic chr12:80237662(-) A-I      intronic chr12:80237663(-) A-I      intronic chr12:80237680(-) A-I      intronic chr12:80237756(-) A-I      intronic chr12:80237772(-) A-I      intronic chr12:80239504(-) A-I      intronic chr12:80193726(-) A-I      intronic chr12:80252989(-) A-I      intronic chr12:80297840(-) A-I      intronic chr12:80194581(-) A-I      intronic chr12:80300492(-) A-I      intronic chr12:80300500(-) A-I      intronic chr12:80300538(-) A-I      intronic chr12:80300544(-) A-I      intronic chr12:80300619(-) A-I      intronic chr12:80300653(-) A-I      intronic chr12:80194598(-) A-I      intronic chr12:80317785(-) A-I      intronic chr12:80300733(-) A-I      intronic chr12:80303349(-) A-I      intronic chr12:80303445(-) A-I      intronic chr12:80303664(-) A-I      intronic chr12:80324417(-) A-I      intronic chr12:80303731(-) A-I      intronic chr12:80303752(-) A-I      intronic chr12:80303753(-) A-I      intronic chr12:80304121(-) A-I      intronic chr12:80304148(-) A-I      intronic chr12:80304199(-) A-I      intronic chr12:80317566(-) A-I      intronic chr12:80317620(-) A-I      intronic chr12:80324370(-) A-I      intronic chr12:80318250(-) A-I      intronic chr12:80318301(-) A-I      intronic chr12:80318333(-) A-I      intronic chr12:80318391(-) A-I      intronic chr12:80318426(-) A-I      intronic chr12:80318428(-) A-I      intronic chr12:80320747(-) A-I      intronic chr12:80318436(-) A-I      intronic chr12:80320103(-) A-I      intronic chr12:80320165(-) A-I      intronic chr12:80320174(-) A-I      intronic chr12:80320175(-) A-I      intronic chr12:80320194(-) A-I      intronic chr12:80320203(-) A-I      intronic chr12:80320198(-) A-I      intronic chr12:80193176(-) A-I      intronic chr12:80193661(-) A-I      intronic chr12:80193568(-) A-I      intronic chr12:80193172(-) A-I      intronic chr12:80193148(-) A-I      intronic chr12:80193061(-) A-I      intronic chr12:80178523(-) A-I      intronic chr12:80263887(-) A-I      intronic chr12:80303391(-) A-I      intronic chr12:80303335(-) A-I      intronic chr12:80217644(-) A-I      intronic chr12:80263890(-) A-I      intronic chr12:80193057(-) A-I      intronic chr12:80240416(-) A-I      intronic chr12:80273106(-) A-I      intronic chr12:80263883(-) A-I      intronic chr12:80300562(-) A-I      intronic chr12:80263892(-) A-I      intronic chr12:80304204(-) A-I      intronic chr12:80303478(-) A-I      intronic chr12:80320244(-) A-I      intronic chr12:80318320(-) A-I      intronic chr12:80193555(-) A-I      intronic chr12:80317657(-) A-I      intronic chr12:80303473(-) A-I      intronic chr12:80318256(-) A-I      intronic chr12:80263889(-) A-I      intronic chr12:80319820(-) A-I      intronic chr12:80324490(-) A-I      intronic chr12:80237623(-) A-I      intronic chr12:80193763(-) A-I      intronic chr12:80290216(-) A-I      intronic chr12:80193573(-) A-I      intronic chr12:80303403(-) A-I      intronic chr12:80176981(-) A-I      intronic chr12:80237378(-) A-I      intronic chr12:80194690(-) A-I      intronic chr12:80246111(-) A-I      intronic chr12:80320759(-) A-I      intronic chr12:80263893(-) A-I      intronic chr12:80193099(-) A-I      intronic chr12:80194869(-) A-I      intronic chr12:80236546(-) A-I      intronic chr12:80303675(-) A-I      intronic chr12:80193586(-) A-I      intronic chr12:80193676(-) A-I      intronic chr12:80263894(-) A-I      intronic chr12:80263891(-) A-I      intronic chr12:80317631(-) A-I      intronic chr12:80193102(-) A-I      intronic chr12:80318459(-) A-I      intronic chr12:80317742(-) A-I      intronic chr12:80237297(-) A-I      intronic chr12:80317606(-) A-I      intronic chr12:80193154(-) A-I      intronic chr12:80237276(-) A-I      intronic chr12:80263882(-) A-I      intronic chr12:80318409(-) A-I      intronic chr12:80177153(-) A-I      intronic chr12:80176987(-) A-I      intronic chr12:80320217(-) A-I      intronic chr12:80304030(-) A-I      intronic chr12:80234917(-) A-I      intronic chr12:80237236(-) A-I      intronic chr12:80193067(-) A-I      intronic chr12:80318481(-) A-I      intronic chr12:80234916(-) A-I      intronic chr12:80193569(-) A-I      intronic chr12:80317741(-) A-I      intronic chr12:80318408(-) A-I      intronic chr12:80215497(-) A-I      intronic chr12:80193515(-) A-I      intronic chr12:80193044(-) A-I      intronic chr12:80177020(-) A-I      intronic chr12:80193053(-) A-I      intronic chr12:80212255(-) A-I      intronic chr12:80237609(-) A-I      intronic chr12:80320784(-) A-I      intronic chr12:80300588(-) A-I      intronic chr12:80320221(-) A-I      intronic chr12:80236050(-) A-I      intronic chr12:80178491(-) A-I      intronic chr12:80193167(-) A-I      intronic chr12:80196445(-) A-I      intronic chr12:80242998(-) A-I      intronic chr12:80317724(-) A-I      intronic chr12:80300629(-) A-I      intronic chr12:80215421(-) A-I      intronic chr12:80212256(-) A-I      intronic chr12:80212241(-) A-I      intronic chr12:80239443(-) A-I      intronic chr12:80303730(-) A-I      intronic chr12:80213525(-) A-I      intronic chr12:80176965(-) A-I      intronic chr12:80237246(-) A-I      intronic chr12:80246179(-) A-I      intronic chr12:80193203(-) A-I      intronic chr12:80193689(-) A-I      intronic chr12:80193677(-) A-I      intronic chr12:80320780(-) A-I      intronic chr12:80234981(-) A-I      intronic chr12:80193707(-) A-I      intronic chr12:80177132(-) A-I      intronic chr12:80194645(-) A-I      intronic chr12:80320924(-) A-I      intronic chr12:80303393(-) A-I      intronic chr12:80193196(-) A-I      intronic chr12:80320252(-) A-I      intronic chr12:80196466(-) A-I      intronic chr12:80320946(-) A-I      intronic chr12:80237362(-) A-I      intronic chr12:80193623(-) A-I      intronic chr12:80300666(-) A-I      intronic chr12:80185276(-) A-I      intronic chr12:80304087(-) A-I      intronic chr12:80319787(-) A-I      intronic chr12:80311004(-) A-I      intronic chr12:80300667(-) A-I      intronic chr12:80193101(-) A-I      intronic chr12:80196449(-) A-I      intronic chr12:80195079(-) A-I      intronic chr12:80319763(-) A-I      intronic chr12:80318482(-) A-I      intronic chr12:80292227(-) A-I      intronic chr12:80236062(-) A-I      intronic chr12:80317676(-) A-I      intronic chr12:80193778(-) A-I      intronic chr12:80212304(-) A-I      intronic chr12:80194582(-) A-I      intronic chr12:80249208(-) A-I      intronic chr12:80215405(-) A-I      intronic chr12:80193713(-) A-I      intronic chr12:80317793(-) A-I      intronic chr12:80193585(-) A-I      intronic chr12:80235887(-) A-I      intronic chr12:80303431(-) A-I      intronic chr12:80213631(-) A-I      intronic chr12:80237622(-) A-I      intronic chr12:80320890(-) A-I      intronic chr12:80178622(-) A-I      intronic chr12:80196415(-) A-I      intronic chr12:80193025(-) A-I      intronic chr12:80304177(-) A-I      intronic chr12:80317660(-) A-I      intronic chr12:80317588(-) A-I      intronic chr12:80320861(-) A-I      intronic chr12:80194662(-) A-I      intronic chr12:80318388(-) A-I      intronic chr12:80303457(-) A-I      intronic chr12:80304258(-) A-I      intronic chr12:80193517(-) A-I      intronic chr12:80194586(-) A-I      intronic chr12:80318498(-) A-I      intronic chr12:80194652(-) A-I      intronic chr12:80246033(-) A-I      intronic chr12:80320732(-) A-I      intronic chr12:80317748(-) A-I      intronic chr12:80318495(-) A-I      intronic chr12:80320130(-) A-I      intronic chr12:80300605(-) A-I      intronic chr12:80304135(-) A-I      intronic chr12:80213517(-) A-I      intronic chr12:80316804(-) A-I      intronic chr12:80185200(-) A-I      intronic chr12:80300627(-) A-I      intronic chr12:80237678(-) A-I      intronic chr12:80237589(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PPP1R12A	chr12:80263877(-) A-I intron -    22028664 chr12:80263879(-) A-I intron -    22028664 chr12:80263882(-) A-I intron -    22028664 chr12:80263883(-) A-I intron -    22028664 chr12:80263887(-) A-I intron -    22028664 chr12:80263889(-) A-I intron -    22028664 chr12:80263890(-) A-I intron -    22028664 chr12:80263891(-) A-I intron -    22028664 chr12:80263892(-) A-I intron -    22028664 chr12:80263893(-) A-I intron -    22028664 chr12:80263894(-) A-I intron -    22028664 chr12:80213525(-) A-I intron -    21960545 chr12:80193025(-) A-G intron -    22484847 chr12:80193053(-) A-G intron -    22484847 chr12:80193057(-) A-G intron -    22484847 chr12:80193585(-) A-G intron -    22484847 chr12:80193586(-) A-G intron -    22484847 chr12:80193689(-) A-G intron -    22484847 chr12:80193763(-) A-G intron -    22484847 chr12:80168415(-) T-A exon 3'UTR    22484847 chr12:80177075(-) G-T intron -    22484847 chr12:80177132(-) A-G intron -    22484847 chr12:80185355(-) T-C intron -    22484847 chr12:80193099(-) A-G intron -    22484847 chr12:80193707(-) A-G intron -    22484847 chr12:80193713(-) A-G intron -    22484847 chr12:80194582(-) A-G intron -    22484847 chr12:80194645(-) A-G intron -    22484847 chr12:80194652(-) A-G intron -    22484847 chr12:80194662(-) A-G intron -    22484847 chr12:80194690(-) A-G intron -    22484847 chr12:80195079(-) A-G intron -    22484847 chr12:80209304(-) C-T intron -    22484847 chr12:80212256(-) A-G intron -    22484847 chr12:80213525(-) A-G intron -    22484847 chr12:80234917(-) A-G intron -    22484847 chr12:80237236(-) A-G intron -    22484847 chr12:80237246(-) A-G intron -    22484847 chr12:80237362(-) A-G intron -    22484847 chr12:80237378(-) A-G intron -    22484847 chr12:80237609(-) A-G intron -    22484847 chr12:80237622(-) A-G intron -    22484847 chr12:80237623(-) A-G intron -    22484847 chr12:80237678(-) A-G intron -    22484847 chr12:80243176(-) T-C intron -    22484847 chr12:80292227(-) A-G intron -    22484847 chr12:80297230(-) G-T intron -    22484847 chr12:80300562(-) A-G intron -    22484847 chr12:80300588(-) A-G intron -    22484847 chr12:80300629(-) A-G intron -    22484847 chr12:80300667(-) A-G intron -    22484847 chr12:80303335(-) A-G intron -    22484847 chr12:80303391(-) A-G intron -    22484847 chr12:80303393(-) A-G intron -    22484847 chr12:80303403(-) A-G intron -    22484847 chr12:80303431(-) A-G intron -    22484847 chr12:80303457(-) A-G intron -    22484847 chr12:80303473(-) A-G intron -    22484847 chr12:80303478(-) A-G intron -    22484847 chr12:80303730(-) A-G intron -    22484847 chr12:80304030(-) A-G intron -    22484847 chr12:80304087(-) A-G intron -    22484847 chr12:80304153(-) C-T intron -    22484847 chr12:80304204(-) A-G intron -    22484847 chr12:80304258(-) A-G intron -    22484847 chr12:80316804(-) A-G intron -    22484847 chr12:80317588(-) A-G intron -    22484847 chr12:80317606(-) A-G intron -    22484847 chr12:80317631(-) A-G intron -    22484847 chr12:80317657(-) A-G intron -    22484847 chr12:80317660(-) A-G intron -    22484847 chr12:80317676(-) A-G intron -    22484847 chr12:80317724(-) A-G intron -    22484847 chr12:80317741(-) A-G intron -    22484847 chr12:80317742(-) A-G intron -    22484847 chr12:80317748(-) A-G intron -    22484847 chr12:80317793(-) A-G intron -    22484847 chr12:80318320(-) A-G intron -    22484847 chr12:80318408(-) A-G intron -    22484847 chr12:80318409(-) A-G intron -    22484847 chr12:80318481(-) A-G intron -    22484847 chr12:80318482(-) A-G intron -    22484847 chr12:80318495(-) A-G intron -    22484847 chr12:80318498(-) A-G intron -    22484847 chr12:80319820(-) A-G intron -    22484847 chr12:80320217(-) A-G intron -    22484847 chr12:80320221(-) A-G intron -    22484847 chr12:80320244(-) A-G intron -    22484847 chr12:80320732(-) A-G intron -    22484847 chr12:80320759(-) A-G intron -    22484847 chr12:80320780(-) A-G intron -    22484847 chr12:80320784(-) A-G intron -    22484847 chr12:80320890(-) A-G intron -    22484847 chr12:80320924(-) A-G intron -    22484847 chr12:80324490(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP1R12A	chr12:80169305-80169306(-) m6A 3'UTR       24981863//27773535//22608085 chr12:80169325-80169326(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr12:80169432-80169433(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr12:80169489-80169490(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:80169612-80169613(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr12:80169656-80169657(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr12:80169720-80169721(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chr12:80169772-80169773(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chr12:80169784-80169785(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chr12:80172432-80172433(-) m6A exon//intron       24981863//27773535//27371828 chr12:80172475-80172476(-) m6A exon//intron       27773535//27371828 chr12:80175639-80175640(-) m6A 3'UTR//CDS//exon       27773535 chr12:80175686-80175687(-) m6A exon//intron       27773535 chr12:80175758-80175759(-) m6A exon//intron       27773535 chr12:80180192-80180193(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:80180249-80180250(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535 chr12:80180904-80180905(-) m6A exon//intron       27773535 chr12:80181017-80181018(-) m6A exon//intron       27773535 chr12:80181175-80181176(-) m6A exon//intron       27773535 chr12:80181317-80181318(-) m6A exon//intron       27773535 chr12:80181355-80181356(-) m6A exon//intron       27773535 chr12:80182475-80182476(-) m6A 3'UTR//CDS//exon       24981863//27773535 chr12:80182555-80182556(-) m6A 3'UTR//CDS//exon       27773535 chr12:80183450-80183451(-) m6A CDS//intron       24981863 chr12:80183587-80183588(-) m6A intron       24981863 chr12:80187647-80187648(-) m6A CDS//exon       24981863//27773535//27371828//22608085 chr12:80187676-80187677(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085 chr12:80187687-80187688(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085 chr12:80187693-80187694(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085 chr12:80189425-80189426(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085 chr12:80190629-80190630(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191001-80191002(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191024-80191025(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191049-80191050(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191064-80191065(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191103-80191104(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191111-80191112(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80191138-80191139(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80192294-80192295(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80192303-80192304(-) m6A CDS//exon       24981863//27773535//22608085 chr12:80200094-80200095(-) m6A CDS//intron       27773535 chr12:80200650-80200651(-) m6A exon//intron       27773535 chr12:80202265-80202266(-) m6A CDS//exon       27773535 chr12:80202338-80202339(-) m6A CDS//exon       27773535 chr12:80203604-80203605(-) m6A CDS       27773535 chr12:80203712-80203713(-) m6A CDS       24981863//27773535 chr12:80211287-80211288(-) m6A CDS       27773535 chr12:80211292-80211293(-) m6A CDS       27773535 chr12:80214556-80214557(-) m6A CDS       27773535 chr12:80214653-80214654(-) m6A CDS       24981863//22575960 chr12:80214689-80214690(-) m6A CDS       24981863 chr12:80214867-80214868(-) m6A CDS       24981863//27773535 chr12:80214887-80214888(-) m6A CDS       24981863//27773535 chr12:80214926-80214927(-) m6A CDS       24981863//27773535 chr12:80215904-80215905(-) m6A CDS//intron       24981863//27773535 chr12:80215938-80215939(-) m6A CDS//intron       24981863//27773535 chr12:80215963-80215964(-) m6A CDS//intron       24981863//27773535 chr12:80221968-80221969(-) m6A exon//intron       27773535 chr12:80222191-80222192(-) m6A CDS//exon       27773535 chr12:80222205-80222206(-) m6A CDS//exon       27773535 chr12:80226240-80226241(-) m1A CDS//exon       26863196 chr12:80226289-80226290(-) m6A exon//intron       24209618//24981863//27773535 chr12:80226315-80226316(-) m6A exon//intron       24981863//27773535 chr12:80226354-80226355(-) m6A exon//intron       24981863//27773535 chr12:80242614-80242615(-) m6A 5'UTR//intron       27773535 chr12:80328492-80328493(-) m6A CDS       27773536 chr12:80328611-80328612(-) m6A CDS       25456834//27371828//27773536 chr12:80328643-80328644(-) m6A CDS       25456834//27371828//27773536 chr12:80328689-80328690(-) Cm CDS       - chr12:80328730-80328731(-) m6A 5'UTR       24284625//24981863//27773535//27371828//27773536 chr12:80328800-80328801(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//27773536 chr12:80329163-80329164(-) m6A 5'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP1R12A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: PPP1R12A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg