Basic Information:

  VIRBase ID:  

VHID00158598

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          MTR:  NM_001291940     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	MTR
miRBase Accession/Entrez ID	MIMAT0010203	4548
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	cblG//HMAG//MS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MTR	chr1:236961178(+) A-I      intronic chr1:236981484(+) A-I      intronic chr1:236981493(+) A-I      intronic chr1:236962685(+) A-I      intronic chr1:236962706(+) A-I      intronic chr1:236985879(+) A-I      intronic chr1:236962467(+) A-I      intronic chr1:237066319(+) A-I      3'UTR chr1:236962697(+) A-I      intronic chr1:236962616(+) A-I      intronic chr1:236962700(+) A-I      intronic chr1:236970663(+) A-I      intronic chr1:236962522(+) A-I      intronic chr1:236961199(+) A-I      intronic chr1:237053744(+) A-I      intronic chr1:236962633(+) A-I      intronic chr1:236982437(+) A-I      intronic chr1:237006307(+) A-I      intronic chr1:237032688(+) A-I      intronic chr1:237066327(+) A-I      3'UTR chr1:237053745(+) A-I      intronic chr1:237032687(+) A-I      intronic chr1:236981576(+) A-I      intronic chr1:236982390(+) A-I      intronic chr1:236969059(+) A-I      intronic chr1:236981511(+) A-I      intronic chr1:236985873(+) A-I      intronic chr1:236968897(+) A-I      intronic chr1:236982378(+) A-I      intronic chr1:237066315(+) A-I      3'UTR chr1:236961109(+) A-I      intronic chr1:236962621(+) A-I      intronic chr1:237061920(+) A-I      3'UTR chr1:237054032(+) A-I      intronic chr1:237066314(+) A-I      3'UTR chr1:237066297(+) A-I      3'UTR chr1:236961135(+) A-I      intronic chr1:236961179(+) A-I      intronic chr1:236962521(+) A-I      intronic chr1:236962515(+) A-I      intronic chr1:236962563(+) A-I      intronic chr1:236985831(+) A-I      intronic chr1:236960995(+) A-I      intronic chr1:237066313(+) A-I      3'UTR chr1:236961112(+) A-I      intronic chr1:237066359(+) A-I      3'UTR chr1:236961106(+) A-I      intronic chr1:236961004(+) A-I      intronic chr1:236962525(+) A-I      intronic chr1:236962666(+) A-I      intronic chr1:236962501(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MTR	chr1:236982390(+) A-I intron -    21960545 chr1:236981511(+) A-G intron -    22484847 chr1:236981576(+) A-G intron -    22484847 chr1:236982390(+) A-G intron -    22484847 chr1:236982437(+) A-G intron -    22484847 chr1:236961112(+) A-G intron -    22484847 chr1:236961135(+) A-G intron -    22484847 chr1:236961179(+) A-G intron -    22484847 chr1:236961199(+) A-G intron -    22484847 chr1:236962501(+) A-G intron -    22484847 chr1:236962515(+) A-G intron -    22484847 chr1:236962521(+) A-G intron -    22484847 chr1:236962563(+) A-G intron -    22484847 chr1:236962633(+) A-G intron -    22484847 chr1:236962697(+) A-G intron -    22484847 chr1:236962700(+) A-G intron -    22484847 chr1:236969053(+) T-C intron -    22484847 chr1:236975370(+) T-A intron -    22484847 chr1:236985873(+) A-G intron -    22484847 chr1:237010300(+) A-C intron -    22484847 chr1:237032687(+) A-G intron -    22484847 chr1:237061942(+) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MTR	chr1:236966807-236966808(+) m6A CDS//exon       24981863 chr1:236966839-236966840(+) m6A CDS//exon       24981863 chr1:236983408-236983409(+) m6A intron       22608085 chr1:236983508-236983509(+) m6A intron       22608085 chr1:236983593-236983594(+) m6A intron       22608085 chr1:236983626-236983627(+) m6A intron       22608085 chr1:237001895-237001896(+) m6A CDS//exon//intron       24981863 chr1:237013652-237013653(+) m6A CDS//exon       24981863 chr1:237013705-237013706(+) m6A CDS//exon       24981863 chr1:237057666-237057667(+) m6A CDS//exon       24284625//24981863//22608085 chr1:237057702-237057703(+) m6A CDS//exon       24284625//24981863//22608085 chr1:237058695-237058696(+) m6A CDS//exon       - chr1:237058736-237058737(+) m6A CDS//exon       - chr1:237060882-237060883(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr1:237060916-237060917(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr1:237060939-237060940(+) m6A CDS//exon       24284625//24981863//22608085 chr1:237061030-237061031(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr1:237061076-237061077(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061089-237061090(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061129-237061130(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061149-237061150(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061210-237061211(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr1:237061221-237061222(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr1:237061331-237061332(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061456-237061457(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061477-237061478(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061493-237061494(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061538-237061539(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:237061632-237061633(+) m6A 3'UTR//exon       24284625//24209618//22608085 chr1:237062085-237062086(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062192-237062193(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062357-237062358(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062368-237062369(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062486-237062487(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062517-237062518(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062562-237062563(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062599-237062600(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062639-237062640(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062658-237062659(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062719-237062720(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062728-237062729(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062751-237062752(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:237062904-237062905(+) m6A 3'UTR//exon       24981863//22608085 chr1:237062927-237062928(+) m6A 3'UTR//exon       24981863//22608085 chr1:237062955-237062956(+) m6A 3'UTR//exon       24981863//22608085 chr1:237062977-237062978(+) m6A 3'UTR//exon       24981863//22608085 chr1:237063014-237063015(+) m6A 3'UTR//exon       24981863//22608085 chr1:237063099-237063100(+) m6A 3'UTR//exon       24981863//22608085 chr1:237063172-237063173(+) m6A 3'UTR//exon       24981863//22608085 chr1:237063251-237063252(+) m6A 3'UTR//exon       24284625 chr1:237063277-237063278(+) m6A 3'UTR//exon       24284625 chr1:237063299-237063300(+) m6A 3'UTR//exon       24284625 chr1:237063316-237063317(+) m6A 3'UTR//exon       24284625 chr1:237063322-237063323(+) m6A 3'UTR//exon       24284625 chr1:237063375-237063376(+) m6A 3'UTR//exon       24284625 chr1:237063650-237063651(+) m6A 3'UTR//exon       27773535 chr1:237063659-237063660(+) m6A 3'UTR//exon       27773535 chr1:237063698-237063699(+) m6A 3'UTR//exon       27773535 chr1:237063733-237063734(+) m6A 3'UTR       27773535 chr1:237064216-237064217(+) m6A 3'UTR       24981863 chr1:237064242-237064243(+) m6A 3'UTR       24981863 chr1:237064284-237064285(+) m6A 3'UTR       24981863//22608085 chr1:237064471-237064472(+) m6A 3'UTR       25456834//24981863 chr1:237064561-237064562(+) m6A 3'UTR       24209618//24981863 chr1:237064596-237064597(+) m6A 3'UTR       24209618//24981863 chr1:237064615-237064616(+) m6A 3'UTR       24209618//24981863 chr1:237064672-237064673(+) m6A 3'UTR       24981863 chr1:237065503-237065504(+) m6A 3'UTR       - chr1:237066687-237066688(+) m6A 3'UTR       22608085 chr1:237066809-237066810(+) m6A 3'UTR       24284625//24981863//22608085 chr1:237066819-237066820(+) m6A 3'UTR       24284625//24981863//22608085 chr1:237066828-237066829(+) m6A 3'UTR       24284625//24981863//22608085 chr1:237066886-237066887(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:237066920-237066921(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr1:237066926-237066927(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:237066931-237066932(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:237066959-237066960(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:237067016-237067017(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:237067038-237067039(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:237067045-237067046(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:237067082-237067083(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:237067102-237067103(+) m6A 3'UTR       24284625//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MTR	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: MTR

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg