Basic Information:

  VIRBase ID:  

VHID00158200

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H4-5p:  MIMAT0010203          AMPD3:  NM_001172431     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H4-5p	AMPD3
miRBase Accession/Entrez ID	MIMAT0010203	272
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AMPD3	chr11:10478650(+) A-I      intronic chr11:10479331(+) A-I      intronic chr11:10479255(+) A-I      intronic chr11:10478652(+) A-I      intronic chr11:10479781(+) A-I      intronic chr11:10479305(+) A-I      intronic chr11:10479222(+) A-I      intronic chr11:10479299(+) A-I      intronic chr11:10479266(+) A-I      intronic chr11:10478744(+) A-I      intronic chr11:10479790(+) A-I      intronic chr11:10482139(+) A-I      intronic chr11:10479227(+) A-I      intronic chr11:10520792(+) A-I      ncRNA chr11:10481829(+) A-I      intronic chr11:10478718(+) A-I      intronic chr11:10478578(+) A-I      intronic chr11:10478659(+) A-I      intronic chr11:10521031(+) A-I      intronic chr11:10478589(+) A-I      intronic chr11:10478730(+) A-I      intronic chr11:10479169(+) A-I      intronic chr11:10478654(+) A-I      intronic chr11:10479394(+) A-I      intronic chr11:10481881(+) A-I      intronic chr11:10479327(+) A-I      intronic chr11:10479742(+) A-I      intronic chr11:10479741(+) A-I      intronic chr11:10478711(+) A-I      intronic chr11:10479354(+) A-I      intronic chr11:10478738(+) A-I      intronic chr11:10479258(+) A-I      intronic chr11:10479240(+) A-I      intronic chr11:10478682(+) A-I      intronic chr11:10479532(+) A-I      intronic chr11:10479789(+) A-I      intronic chr11:10479386(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AMPD3	chr11:10479222(+) A-G intron -    22484847 chr11:10479240(+) A-G intron -    22484847 chr11:10479255(+) A-G intron -    22484847 chr11:10479258(+) A-G intron -    22484847 chr11:10479386(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AMPD3	chr11:10483163-10483164(+) m6A 5'UTR//CDS//exon       - chr11:10483202-10483203(+) m6A 5'UTR//CDS//exon       - chr11:10483276-10483277(+) m6A 5'UTR//CDS//exon       - chr11:10506396-10506397(+) m6A CDS//exon//intron       - chr11:10506533-10506534(+) m6A 3'UTR//CDS//exon       - chr11:10506546-10506547(+) m6A 3'UTR//CDS//exon       - chr11:10508785-10508786(+) m6A 3'UTR//CDS       - chr11:10521702-10521703(+) m6A 3'UTR//CDS//exon       - chr11:10521716-10521717(+) m6A 3'UTR//CDS//exon       - chr11:10521729-10521730(+) m6A 3'UTR//CDS//exon       - chr11:10526174-10526175(+) m6A 3'UTR//CDS//exon       24981863 chr11:10527274-10527275(+) m6A 3'UTR//CDS       24981863 chr11:10527295-10527296(+) m6A 3'UTR//CDS       24981863 chr11:10527320-10527321(+) m6A 3'UTR//CDS       24981863 chr11:10527359-10527360(+) m6A 3'UTR//CDS       25456834//24981863 chr11:10527508-10527509(+) m6A 3'UTR       24981863 chr11:10527514-10527515(+) m6A 3'UTR       24981863 chr11:10527554-10527555(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	AMPD3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H4-5p
Interactor2: AMPD3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg